View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_low_26 (Length: 285)
Name: NF1124_low_26
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3678374 - 3678616
Alignment:
| Q |
1 |
ctcttggtgtctcaagatttgtatcattggcttattggattattcatgtgagattcgtaattttttcaatttggttcctagcttatattttcatttggtt |
100 |
Q |
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| T |
3678374 |
ctcttggtgtctcaagatttgtatcattggcttattggattattcatgtgagattcgtaattttttcaatttggttcctagcttatattttcatttggtt |
3678473 |
T |
|
| Q |
101 |
tcataatataattaactttgtatctttaacaaaaattaacttttaaataaaacagtgtataacccttgtgaatgtaggcatattaggatatcaacacatt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
3678474 |
tcataatataattaactttatatctttaacaaaaattaacttttaaataaaacagtgtatagcccttgtgaatgtaggcatattgggatatcaacacatt |
3678573 |
T |
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| Q |
201 |
gaatattaatgtgtaaggctttctaa-ttttgtagacctatga |
242 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
3678574 |
gaatattaatgtgtaaagctttctaacttttgtagacctatga |
3678616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3663036 - 3663091
Alignment:
| Q |
1 |
ctcttggtgtctcaagatttgtatcattggcttattggattattcatgtgagattc |
56 |
Q |
| |
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|||||||||||||||||||| | |||||||||| ||||||||||||||| |||||| |
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| T |
3663036 |
ctcttggtgtctcaagatttctctcattggctttttggattattcatgtaagattc |
3663091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3685911 - 3685966
Alignment:
| Q |
1 |
ctcttggtgtctcaagatttgtatcattggcttattggattattcatgtgagattc |
56 |
Q |
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|||||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
3685911 |
ctcttggtgtttcaagatttttttcactggcttattggattattcatgtgagattc |
3685966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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