View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1124_low_3 (Length: 706)

Name: NF1124_low_3
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1124_low_3
NF1124_low_3
[»] chr3 (4 HSPs)
chr3 (325-677)||(44803320-44803671)
chr3 (6-263)||(44803001-44803258)
chr3 (647-677)||(44799820-44799850)
chr3 (168-212)||(8845207-8845251)
[»] chr5 (4 HSPs)
chr5 (520-677)||(6601653-6601808)
chr5 (582-658)||(6609203-6609279)
chr5 (168-210)||(35695230-35695272)
chr5 (151-210)||(4460462-4460526)
[»] chr4 (2 HSPs)
chr4 (168-236)||(4605838-4605906)
chr4 (168-212)||(6484697-6484741)
[»] chr8 (1 HSPs)
chr8 (167-209)||(40038944-40038986)
[»] chr7 (1 HSPs)
chr7 (167-208)||(32358827-32358868)
[»] chr2 (1 HSPs)
chr2 (180-212)||(29241628-29241660)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 325 - 677
Target Start/End: Original strand, 44803320 - 44803671
Alignment:
Q  325 atgtttctgaagaggaagaaccaataagaatttccctnnnnnnnctagaatttgatgcgctccctcatcttcatctttgtgttgctgccacatctcattc 424  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44803320 atgtttctgaagaggaagaaccaataagaatttccctaaaaaaactagaatttgatgcgctccctcatcttcatctttgtgttgctgccacatctcattc 44803419  T
Q  425 tttctaaatcaattaatcaacaacaaccttctatttctttcctccatccaatcatttttggttgcccaaggcaagtaagtagaaagaaacaaatgattgc 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44803420 tttctaaatcaattaatcaacaacaaccttctatttctttcctccatccaatcatttt-ggttgcccaaggcaagtaagtagaaagaaacaaatgattgc 44803518  T
Q  525 attcatgcttcaaacattattaattaaaacttcatgaactctttcagagtgaatggtcattttgagctgtacctcttggtcgtagagatgggacaacaac 624  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44803519 attcatgcttccaacattattaattaaaacttcatgaactctttcagagtgaatggtcattttgagctgtacctcttggtcgtagagatgggacaacaac 44803618  T
Q  625 aagtgagagtcaggcaaataacttgccatcacccaccctttgaacctctagaa 677  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44803619 aagtgagagtcaggaaaataacttgccatcacccaccctttgaacctctagaa 44803671  T

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Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 44803001 - 44803258
Alignment:
Q  6 ctccaataatataactaatatgatatagattcttttgctaaaaaagaaattatatagattcttatcannnnnnnncttggggtgaaaaccttgatatata 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  44803001 ctccaataatataactaatatgatatagattcttttgctaaaaaagaaattatatagattcttatcattttttttcttggggtgaaaaccttgatatata 44803100  T
Q  106 cacgttttatcgctcggcttaatgaaataagttacattcttatcttgataccaacaatatatttatatgcaattttgtttaaatgtataattggaagtga 205  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44803101 cacgttttatcgctccgcttaatgaaataagttacattcttatcttgataccaacaatatatgtatatgcaattttgtttaaatgtataattggaagtga 44803200  T
Q  206 aaaagtctattcaaaatcatgtaatctctttgtatgctgtatagattgtgttcgtgta 263  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44803201 aaaagtctattcaaaatcatgtaatctctttgtatgcagtatagattgtgttcgtgta 44803258  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 647 - 677
Target Start/End: Original strand, 44799820 - 44799850
Alignment:
Q  647 ttgccatcacccaccctttgaacctctagaa 677  Q
    |||||||||||||||||||||||||||||||    
T  44799820 ttgccatcacccaccctttgaacctctagaa 44799850  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 8845207 - 8845251
Alignment:
Q  168 ttatatgcaattttgtttaaatgtataattggaagtgaaaaagtc 212  Q
    ||||| ||||||||||| ||| ||||||||||||||||| |||||    
T  8845207 ttataggcaattttgttgaaaggtataattggaagtgaacaagtc 8845251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 520 - 677
Target Start/End: Complemental strand, 6601808 - 6601653
Alignment:
Q  520 attgcattcatgcttcaaacat--tattaattaaaacttcatgaactctttcagagtgaatggtcattttgagctgtacctcttggtcgtagagatggga 617  Q
    ||||||| |||||||| |||||  ||||||| |||||||| | || | ||||||||| || || ||||||| |||||||||||||||||||||||||| |    
T  6601808 attgcatgcatgcttccaacatattattaatcaaaacttctttaattatttcagagtaaagggccattttgggctgtacctcttggtcgtagagatggaa 6601709  T
Q  618 caacaacaagtgagagtcaggcaaataacttgccatcacccaccctttgaacctctagaa 677  Q
    ||||  | ||||||||  | |||||||||||||||||    |||||||||||||||||||    
T  6601708 caaccgcgagtgagagcgacgcaaataacttgccatc----accctttgaacctctagaa 6601653  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 582 - 658
Target Start/End: Complemental strand, 6609279 - 6609203
Alignment:
Q  582 cattttgagctgtacctcttggtcgtagagatgggacaacaacaagtgagagtcaggcaaataacttgccatcaccc 658  Q
    ||||||| ||||| |||||||||||||||||||| |||||  | ||||||||| |||||||||||||||||||||||    
T  6609279 cattttgggctgtgcctcttggtcgtagagatggcacaaccgcgagtgagagtgaggcaaataacttgccatcaccc 6609203  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 35695272 - 35695230
Alignment:
Q  168 ttatatgcaattttgtttaaatgtataattggaagtgaaaaag 210  Q
    |||||||||| |||||||||  |||||||||||||||||||||    
T  35695272 ttatatgcaaatttgtttaagggtataattggaagtgaaaaag 35695230  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 4460526 - 4460462
Alignment:
Q  151 tgataccaacaatata-----tttatatgcaattttgtttaaatgtataattggaagtgaaaaag 210  Q
    ||||||||||||||||     |||||| | ||||||||||||  |||||||||||||||||||||    
T  4460526 tgataccaacaatatagcatttttataggtaattttgtttaagggtataattggaagtgaaaaag 4460462  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 4605838 - 4605906
Alignment:
Q  168 ttatatgcaattttgtttaaatgtataattggaagtgaaaaagtctattcaaaatcatgtaatctcttt 236  Q
    |||||||||| |||||||||  ||| | |||||||||||| |||| |||||||| |||||| |||||||    
T  4605838 ttatatgcaaatttgtttaagcgtacacttggaagtgaaagagtcaattcaaaaccatgtattctcttt 4605906  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 6484741 - 6484697
Alignment:
Q  168 ttatatgcaattttgtttaaatgtataattggaagtgaaaaagtc 212  Q
    |||||||||| |||||||||  |||||||||||||||||||||||    
T  6484741 ttatatgcaaatttgtttaagggtataattggaagtgaaaaagtc 6484697  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 40038944 - 40038986
Alignment:
Q  167 tttatatgcaattttgtttaaatgtataattggaagtgaaaaa 209  Q
    |||||||| || ||||||||| |||||||||||||||||||||    
T  40038944 tttatatgtaaatttgtttaagtgtataattggaagtgaaaaa 40038986  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 32358868 - 32358827
Alignment:
Q  167 tttatatgcaattttgtttaaatgtataattggaagtgaaaa 208  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  32358868 tttatatgcaaatttgtttaggtgtataattggaagtgaaaa 32358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 29241660 - 29241628
Alignment:
Q  180 ttgtttaaatgtataattggaagtgaaaaagtc 212  Q
    ||||||||||||||||||| |||||||||||||    
T  29241660 ttgtttaaatgtataattgaaagtgaaaaagtc 29241628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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