View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_low_30 (Length: 251)
Name: NF1124_low_30
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_30 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 24209456 - 24209224
Alignment:
| Q |
13 |
aatatttggaataatgtttacattttgaaagatgtactaaaatgtaaaatacagcaaatgatacagaacaactggttggaactatggaagaatctgtcaa |
112 |
Q |
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| T |
24209456 |
aatatttggaataatgtttacattttgaaagatgtattgaaatgtaaaatgcaacatatgatgcagaac---tgggtggaactatataaaaatctgtcaa |
24209360 |
T |
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| Q |
113 |
acaaagatctattagcaacttcaccaaataggagacgagtagcataacttcatctaataaaatgaactttaactgttcatgaaacaaccgagttattatt |
212 |
Q |
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| T |
24209359 |
acaaagatctatgagcaacatcaacaaataggagacaagtagcataacttcatctaa---aatgaactttaactgttcatgaaacaactgagttattatt |
24209263 |
T |
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| Q |
213 |
gtctcttaactggtaagagtttctgcactcaaaaagcaa |
251 |
Q |
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| T |
24209262 |
ctctcttaactggtaagagtttctgcactcaaaaagcaa |
24209224 |
T |
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