View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_low_4 (Length: 606)
Name: NF1124_low_4
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 311
Target Start/End: Original strand, 8061445 - 8061726
Alignment:
| Q |
30 |
ccaatttctctatattggatgctatatgatactcgtacttgtgaatcccctttaggacatgttgtcggagttctttgatatagaatgcacatctattatg |
129 |
Q |
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| T |
8061445 |
ccaatttctctatattggatgctatatgatactcgtactcgtgaatcccctttaggacattttgtcggagttctttgatatagaatgcacatctattatg |
8061544 |
T |
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| Q |
130 |
aagcatatcattggatgatacttaacaaacaatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataatggctta |
229 |
Q |
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| T |
8061545 |
aagcatatctttggatgatacttaacaaacaatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataatggctta |
8061644 |
T |
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| Q |
230 |
gtttagtttgaatcacaaaaatgattctattatgaagcttaacattcaatgatacttatatttgacattatctgcccttata |
311 |
Q |
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| T |
8061645 |
gtttagtttgaatcacaaaaatgattctattatgaagcatatcattcaatgatgcttatatttgacattatctgcccttata |
8061726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 446 - 595
Target Start/End: Original strand, 8067523 - 8067672
Alignment:
| Q |
446 |
ttcaagtctctctcttattttctatcgaagcgaccgatcatgtgtgtgctctcaattctttttgtttgtacgagagaacctaacagagatatcaaatcgg |
545 |
Q |
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| T |
8067523 |
ttcaagtctctctcttattttctatcgaagcgaccgatcatgtgtgtgctctcaattctttttgtttgtacgagagaacctaacagagatatcaaatcgg |
8067622 |
T |
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| Q |
546 |
acaaagaccaacacaatatcataaccgttgttcatgacttctctgttcat |
595 |
Q |
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| T |
8067623 |
acaaagaccaacacaatatcataaccgttgttcatgacttctctgttcat |
8067672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 345 - 437
Target Start/End: Original strand, 8061760 - 8061852
Alignment:
| Q |
345 |
ataatggaagttgggaatttcatttgacattatgtgactttcataagacactagttttggacagacatgtttaaaaaataattggcataaact |
437 |
Q |
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| T |
8061760 |
ataatggaatttgggaatttcatttgacattatgtgactttcataagacactagttttggacagacatgtttaaaaaataattggcataaact |
8061852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 125 - 250
Target Start/End: Complemental strand, 7930946 - 7930820
Alignment:
| Q |
125 |
ttatgaagcatatcattggatgatacttaacaaa-caatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataat |
223 |
Q |
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| T |
7930946 |
ttatgaagcatgtcattcaattatacttgacaaaacaacagtttcctaatt-taatatccacataaaagaaaagaagaaatggcttaaagttaagattat |
7930848 |
T |
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| Q |
224 |
ggcttagtttagttt-gaatcacaaaaa |
250 |
Q |
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| T |
7930847 |
ggcttagtttagtttagaatcacaaaaa |
7930820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 527
Target Start/End: Original strand, 47140061 - 47140115
Alignment:
| Q |
476 |
cgaccgatcatgtgtgtg---ctctcaattctttttgtttgtacgagagaaccta |
527 |
Q |
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| T |
47140061 |
cgactgatcatgtgtgtgtgactctcaattcttcttgtttgtgcgagagaaccta |
47140115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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