View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_low_9 (Length: 461)
Name: NF1124_low_9
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 266 - 403
Target Start/End: Original strand, 2162625 - 2162762
Alignment:
| Q |
266 |
aaggtaattaaaaggattgagtaccttgtttggttacttggattagaggaattagttggttgttctacatcaatcacttgagcatcgatataatgatgtg |
365 |
Q |
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| T |
2162625 |
aaggtaatgaaaaggattgagtaccttgtttggttatttggattagaggaattagtaggttgttctacatcaatcacttgagcatcgctataatgatgtg |
2162724 |
T |
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| Q |
366 |
tataaatattcatgagatacatatacatatttgaatta |
403 |
Q |
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| T |
2162725 |
tataaatattcatgagatacatatacatatttgaatta |
2162762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 134 - 403
Target Start/End: Original strand, 2164497 - 2164751
Alignment:
| Q |
134 |
gatacctaaatatttatcattgtgttcatgagattaagattagatacaaacatacattgttttatgagcnnnnnnnngttttgagctacaagaaagtaat |
233 |
Q |
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| T |
2164497 |
gatacctaaatatttatcattgtgttcatgagatta------gataca----tacattattttatgagcttttttttgttttgaaccacaagaaagtaat |
2164586 |
T |
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| Q |
234 |
taaaaaccacaaagaaaaataataattttcagaaggtaattaaaaggattgagtaccttgtttggttacttggattagaggaattagttggttgttctac |
333 |
Q |
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| T |
2164587 |
taaaaaccaaaaagaaag----taatta----aagatcatgaaaaggattgagtaccttgtttggttatttggattagaggaattagttggttgttctac |
2164678 |
T |
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| Q |
334 |
atcaatcacttgagcatcgat---ataatgatgtgtataaatattcatgagatacatatacatatttgaatta |
403 |
Q |
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| T |
2164679 |
cgtaatcccttgagcatcgctgtaataataatgtgtataaattttcatgagatacatatacatatttcaatta |
2164751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 2164416 - 2164477
Alignment:
| Q |
28 |
aatttaccaccatgagatgacatctttagggcagggaagataaacaatatcaagcataatat |
89 |
Q |
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| T |
2164416 |
aatttaccatcataagatgacatctttagggcagggaagataatcaatatcaagcataatat |
2164477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 2162218 - 2162264
Alignment:
| Q |
43 |
gatgacatctttagggcagggaagataaacaatatcaagcataatat |
89 |
Q |
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| T |
2162218 |
gatgacatctttagtgcagggaagataatcaacagcaagcataatat |
2162264 |
T |
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