View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11250_high_12 (Length: 234)

Name: NF11250_high_12
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11250_high_12
NF11250_high_12
[»] chr4 (16 HSPs)
chr4 (54-219)||(3823545-3823710)
chr4 (162-219)||(4222125-4222182)
chr4 (55-147)||(3967041-3967134)
chr4 (140-193)||(50856363-50856416)
chr4 (155-193)||(12257720-12257758)
chr4 (154-195)||(25343156-25343197)
chr4 (154-195)||(47441655-47441696)
chr4 (147-199)||(49938559-49938612)
chr4 (140-192)||(51420528-51420580)
chr4 (155-193)||(19027818-19027856)
chr4 (140-194)||(54966976-54967030)
chr4 (160-193)||(5313121-5313154)
chr4 (13-42)||(5573746-5573775)
chr4 (139-195)||(49938715-49938772)
chr4 (1-29)||(4222202-4222230)
chr4 (161-193)||(43035224-43035256)
[»] chr1 (16 HSPs)
chr1 (147-195)||(6983934-6983982)
chr1 (143-199)||(35019211-35019267)
chr1 (137-193)||(2435914-2435970)
chr1 (139-190)||(10378855-10378906)
chr1 (147-193)||(50811924-50811970)
chr1 (137-193)||(2436020-2436076)
chr1 (141-193)||(44485236-44485288)
chr1 (154-193)||(20036212-20036251)
chr1 (147-181)||(25554861-25554895)
chr1 (140-186)||(43207467-43207513)
chr1 (141-195)||(52910196-52910250)
chr1 (139-192)||(17470474-17470527)
chr1 (160-193)||(34714621-34714654)
chr1 (139-195)||(6358111-6358167)
chr1 (142-194)||(15511277-15511329)
chr1 (161-193)||(35117895-35117927)
[»] chr5 (2 HSPs)
chr5 (140-193)||(43574552-43574605)
chr5 (140-193)||(39301078-39301131)
[»] chr2 (5 HSPs)
chr2 (142-199)||(4516472-4516529)
chr2 (161-193)||(33795261-33795293)
chr2 (147-193)||(99390-99436)
chr2 (151-192)||(26684750-26684792)
chr2 (141-193)||(44521500-44521552)
[»] chr8 (5 HSPs)
chr8 (140-192)||(14018097-14018149)
chr8 (140-193)||(44781633-44781686)
chr8 (154-192)||(26457684-26457722)
chr8 (147-193)||(30962900-30962946)
chr8 (147-193)||(42083826-42083872)
[»] chr7 (8 HSPs)
chr7 (136-199)||(34626328-34626392)
chr7 (137-195)||(28362270-28362328)
chr7 (147-196)||(3469303-3469352)
chr7 (141-190)||(13805058-13805107)
chr7 (156-192)||(22065559-22065595)
chr7 (154-193)||(19265784-19265823)
chr7 (154-188)||(21220102-21220136)
chr7 (140-192)||(42102013-42102065)
[»] chr3 (7 HSPs)
chr3 (141-193)||(45620956-45621008)
chr3 (149-193)||(26573113-26573157)
chr3 (154-188)||(829574-829608)
chr3 (138-192)||(25944445-25944498)
chr3 (148-193)||(34420771-34420816)
chr3 (134-193)||(8247816-8247876)
chr3 (161-193)||(19731000-19731032)
[»] chr6 (4 HSPs)
chr6 (140-195)||(12889381-12889436)
chr6 (140-193)||(13905106-13905159)
chr6 (162-199)||(32728277-32728314)
chr6 (147-187)||(11849017-11849057)
[»] scaffold0057 (1 HSPs)
scaffold0057 (147-193)||(47010-47056)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 219
Target Start/End: Complemental strand, 3823710 - 3823545
Alignment:
Q  54 tttggagaatactgtcaagatttatgttggttgaagctagtttacactcactaaagattaaattttgtttaattatgcacaattataaggggaagcctta 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  3823710 tttggagaatactgtcaagatttatgttggtggaagctagtttacactcaccgaagattaaattttgtttaattatgcacaattataaggggaagcctta 3823611  T
Q  154 gcgcaatggtaaagttgttgtcacgtgattgaaaggtcacagattccttaaaacaacctcttttgt 219  Q
    | | |||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||    
T  3823610 gtgtaatggtaaagttgttgtcacatgattgaaaggttacaaattccttaaaacaacctcatttgt 3823545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 4222182 - 4222125
Alignment:
Q  162 gtaaagttgttgtcacgtgattgaaaggtcacagattccttaaaacaacctcttttgt 219  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  4222182 gtaaagttgttgtcacgttattgaaaggtcacaaattccttaaaacaacctcttttgt 4222125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 3967041 - 3967134
Alignment:
Q  55 ttggagaatactgtcaagatttatgttggttgaagctagtttacactcactaaagattaa-attttgtttaattatgcacaattataaggggaa 147  Q
    ||||||||||||||||||||| |||||||| | |||||||||||| |||   ||||| || |||| ||| |||||||  |||||||||||||||    
T  3967041 ttggagaatactgtcaagattaatgttggtggtagctagtttacaatcatggaagatcaagatttggttgaattatgttcaattataaggggaa 3967134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 50856416 - 50856363
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| |||||| |||||| ||||||||||||||||| |||||||||||||||    
T  50856416 aagggggagccttggcgcaacggtaaagttgttgtcacatgattgaaaggtcac 50856363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 12257758 - 12257720
Alignment:
Q  155 cgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  12257758 cgcaacggtaaagttgttgtcacgtgattgaaaggtcac 12257720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 25343156 - 25343197
Alignment:
Q  154 gcgcaatggtaaagttgttgtcacgtgattgaaaggtcacag 195  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  25343156 gcgcaatggtaaagttgttgtcacgtgactgataggtcacag 25343197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 47441696 - 47441655
Alignment:
Q  154 gcgcaatggtaaagttgttgtcacgtgattgaaaggtcacag 195  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  47441696 gcgcaacggtaaagttgttgtcacgtgactgaaaggtcacag 47441655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 49938612 - 49938559
Alignment:
Q  147 agccttagcgcaatggtaaa-gttgttgtcacgtgattgaaaggtcacagattc 199  Q
    |||||| |||||| |||||| ||||||||||||||| |||||||||||||||||    
T  49938612 agccttggcgcaacggtaaaagttgttgtcacgtgactgaaaggtcacagattc 49938559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 51420528 - 51420580
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtca 192  Q
    |||||| |||||| |||||| ||| ||||||||||||||||| ||||||||||    
T  51420528 aagggggagccttggcgcaacggtgaagttgttgtcacgtgactgaaaggtca 51420580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 19027818 - 19027856
Alignment:
Q  155 cgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  19027818 cgcaatggtagagttgttgtcacgtgactgaaaggtcac 19027856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 54966976 - 54967030
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcaca 194  Q
    |||||| | |||| |||||| |||||||||||||||| |||| ||||||||||||    
T  54966976 aagggggaaccttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcaca 54967030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 5313154 - 5313121
Alignment:
Q  160 tggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||||||||||||||| ||||||||||||||||    
T  5313154 tggtaaagttgttgtcatgtgattgaaaggtcac 5313121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 5573746 - 5573775
Alignment:
Q  13 gacaaaacatgaaatttctacacttttatc 42  Q
    ||||||||||||||||||||||||||||||    
T  5573746 gacaaaacatgaaatttctacacttttatc 5573775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 49938772 - 49938715
Alignment:
Q  139 taaggggaagccttagcgcaatggtaaa-gttgttgtcacgtgattgaaaggtcacag 195  Q
    ||||||| |||| | |||||| |||||| ||||||||||||||| |||||||||||||    
T  49938772 taagggggagccctggcgcaacggtaaaagttgttgtcacgtgactgaaaggtcacag 49938715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4222230 - 4222202
Alignment:
Q  1 tctccatcttatgacaaaacatgaaattt 29  Q
    |||||||||||||||||||||||||||||    
T  4222230 tctccatcttatgacaaaacatgaaattt 4222202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 43035224 - 43035256
Alignment:
Q  161 ggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||||||||||||||||||| |||||||||||    
T  43035224 ggtaaagttgttgtcacgtgactgaaaggtcac 43035256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 6983982 - 6983934
Alignment:
Q  147 agccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcacag 195  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  6983982 agccttggcgcaatggtaaagttgttgtcacgtgactgaaaggtcacag 6983934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 35019211 - 35019267
Alignment:
Q  143 gggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcacagattc 199  Q
    |||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||    
T  35019211 gggaagccttggcgcaacggtaaagttgttgtcacatgactgaaaggtcacagattc 35019267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 2435970 - 2435914
Alignment:
Q  137 tataaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||||||  ||||| |||||| ||||||||||||||||||||| |||||||||||    
T  2435970 tataagggggggccttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcac 2435914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 10378906 - 10378855
Alignment:
Q  139 taaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggt 190  Q
    |||||||||||||| | |||| ||||||||||||||||||||| ||||||||    
T  10378906 taaggggaagccttggtgcaacggtaaagttgttgtcacgtgactgaaaggt 10378855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 50811924 - 50811970
Alignment:
Q  147 agccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||    
T  50811924 agccttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcac 50811970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 2436076 - 2436020
Alignment:
Q  137 tataaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||||||  ||||| | |||| ||||||||||||||||||||| |||||||||||    
T  2436076 tataagggggggccttggtgcaacggtaaagttgttgtcacgtgactgaaaggtcac 2436020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 44485288 - 44485236
Alignment:
Q  141 aggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||| |||||| ||||||  ||||||||||||||| ||||||||||||||||    
T  44485288 agggggagccttggcgcaacagtaaagttgttgtcatgtgattgaaaggtcac 44485236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 20036212 - 20036251
Alignment:
Q  154 gcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  20036212 gcgcaatggtaaagttgttgtcatgtgactgaaaggtcac 20036251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 25554895 - 25554861
Alignment:
Q  147 agccttagcgcaatggtaaagttgttgtcacgtga 181  Q
    |||||| ||||||||||||||||||||||||||||    
T  25554895 agccttggcgcaatggtaaagttgttgtcacgtga 25554861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 43207467 - 43207513
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaa 186  Q
    |||||| |||||| |||||| ||||||||||||||||||||| ||||    
T  43207467 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 43207513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 52910196 - 52910250
Alignment:
Q  141 aggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcacag 195  Q
    ||||| |||||| | |||| |||||||||||||||| |||| |||||||||||||    
T  52910196 agggggagccttggtgcaacggtaaagttgttgtcatgtgactgaaaggtcacag 52910250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 17470527 - 17470474
Alignment:
Q  139 taaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtca 192  Q
    ||||||| |||||| | |||| ||||||||||||||||||||| |||| |||||    
T  17470527 taagggggagccttggtgcaacggtaaagttgttgtcacgtgactgaatggtca 17470474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 34714621 - 34714654
Alignment:
Q  160 tggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||||||||||||||| ||||||||||||||||    
T  34714621 tggtaaagttgttgtcatgtgattgaaaggtcac 34714654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 6358111 - 6358167
Alignment:
Q  139 taaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcacag 195  Q
    ||||||| |||||| |||||| |||||| ||||| |||| ||| |||||||||||||    
T  6358111 taagggggagccttggcgcaacggtaaatttgttttcacatgactgaaaggtcacag 6358167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 15511329 - 15511277
Alignment:
Q  142 ggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcaca 194  Q
    |||| |||||| ||||||||||||||||||||| | |||  ||||||||||||    
T  15511329 gggggagccttggcgcaatggtaaagttgttgtaatgtggctgaaaggtcaca 15511277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 35117927 - 35117895
Alignment:
Q  161 ggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||||||||||||||||||| |||||||||||    
T  35117927 ggtaaagttgttgtcacgtgactgaaaggtcac 35117895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 43574552 - 43574605
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| |||||| |||||||| ||||||||||||||||||| |||||||||||    
T  43574552 aaggggtagccttggcgcaatgataaagttgttgtcacgtgactgaaaggtcac 43574605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 39301078 - 39301131
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| |||||| |||||| |||||||||||||||| || | |||||||||||    
T  39301078 aagggggagccttggcgcaacggtaaagttgttgtcatgttactgaaaggtcac 39301131  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 4516529 - 4516472
Alignment:
Q  142 ggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcacagattc 199  Q
    |||| |||||| |||||| ||||||||||||||||||||| |||||||||||| ||||    
T  4516529 gggggagccttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacatattc 4516472  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 33795261 - 33795293
Alignment:
Q  161 ggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||||||||||||||||||||||||||||||    
T  33795261 ggtaaagttgttgtcacgtgattgaaaggtcac 33795293  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 99436 - 99390
Alignment:
Q  147 agccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| ||||||  |||||||||||||||||||| |||||||||||    
T  99436 agccttggcgcaacagtaaagttgttgtcacgtgactgaaaggtcac 99390  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 26684792 - 26684750
Alignment:
Q  151 ttagcgcaa-tggtaaagttgttgtcacgtgattgaaaggtca 192  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    
T  26684792 ttagcgcaactggtaaagttgttgtcatgtgattgaaaggtca 26684750  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 44521552 - 44521500
Alignment:
Q  141 aggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||| |||||| ||| || |||||||||||| |||||||| |||||||||||    
T  44521552 agggggagccttggcggaacggtaaagttgttatcacgtgactgaaaggtcac 44521500  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 14018149 - 14018097
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtca 192  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||||||||||||    
T  14018149 aagggggagccttggcgcaacggtaatgttgttgtcacgtgattgaaaggtca 14018097  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 44781686 - 44781633
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| |||||| |||||| ||||||||||||||||||||| |||||| ||||    
T  44781686 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaaagttcac 44781633  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 26457684 - 26457722
Alignment:
Q  154 gcgcaatggtaaagttgttgtcacgtgattgaaaggtca 192  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  26457684 gcgcaacggtaaagttgttgtcgcgtgattgaaaggtca 26457722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 30962946 - 30962900
Alignment:
Q  147 agccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| |||||| || ||||||||||||| ||||||||||||||||    
T  30962946 agccttggcgcaacggaaaagttgttgtcatgtgattgaaaggtcac 30962900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 42083872 - 42083826
Alignment:
Q  147 agccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| |||||| |||||| |||||||||||||| |||||||||||    
T  42083872 agccttggcgcaacggtaaaattgttgtcacgtgactgaaaggtcac 42083826  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 34626392 - 34626328
Alignment:
Q  136 ttataaggggaagccttagcgcaa-tggtaaagttgttgtcacgtgattgaaaggtcacagattc 199  Q
    |||| ||||| | ||||||||||| ||||||||||||||||| |||||||||||| |||||||||    
T  34626392 ttatgaggggtaaccttagcgcaactggtaaagttgttgtcatgtgattgaaaggccacagattc 34626328  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 28362328 - 28362270
Alignment:
Q  137 tataaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcacag 195  Q
    ||||||||| |||||| |||||| |||||||||||||||| |||  |||||||||||||    
T  28362328 tataagggggagccttggcgcaacggtaaagttgttgtcatgtggctgaaaggtcacag 28362270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 3469352 - 3469303
Alignment:
Q  147 agccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcacaga 196  Q
    |||||| |||||| |||||||||||||||| |||| ||||||||||||||    
T  3469352 agccttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcacaga 3469303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 13805058 - 13805107
Alignment:
Q  141 aggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggt 190  Q
    ||||| |||||| ||||||||||||||||||||||| |||| ||||||||    
T  13805058 agggggagccttggcgcaatggtaaagttgttgtcatgtgactgaaaggt 13805107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 22065559 - 22065595
Alignment:
Q  156 gcaatggtaaagttgttgtcacgtgattgaaaggtca 192  Q
    |||||||||||||||||||||||||||||||| ||||    
T  22065559 gcaatggtaaagttgttgtcacgtgattgaaaagtca 22065595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 19265784 - 19265823
Alignment:
Q  154 gcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  19265784 gcgcaacggtaaagttgttgtcacgtgactgaaaggtcac 19265823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 21220136 - 21220102
Alignment:
Q  154 gcgcaatggtaaagttgttgtcacgtgattgaaag 188  Q
    |||||||||||||||||||||||||||| ||||||    
T  21220136 gcgcaatggtaaagttgttgtcacgtgactgaaag 21220102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 42102065 - 42102013
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtca 192  Q
    ||||||| ||||| || ||| ||||||||||||||||||||| || |||||||    
T  42102065 aaggggaggccttggcacaacggtaaagttgttgtcacgtgactggaaggtca 42102013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 45621008 - 45620956
Alignment:
Q  141 aggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||| |||||| |||||| ||||||||||||||||||||| |||||||||||    
T  45621008 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcac 45620956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 26573113 - 26573157
Alignment:
Q  149 ccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||| |||||| ||||||||||||||||||||| |||||||||||    
T  26573113 ccttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcac 26573157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 829608 - 829574
Alignment:
Q  154 gcgcaatggtaaagttgttgtcacgtgattgaaag 188  Q
    |||||| ||||||||||||||||||||||||||||    
T  829608 gcgcaacggtaaagttgttgtcacgtgattgaaag 829574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 25944445 - 25944498
Alignment:
Q  138 ataaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtca 192  Q
    ||||||||| ||||| ||||||  |||||||||||||||||||| ||||||||||    
T  25944445 ataagggga-gccttggcgcaacagtaaagttgttgtcacgtgactgaaaggtca 25944498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 34420816 - 34420771
Alignment:
Q  148 gccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    ||||| ||||||  |||||||||||||||||||| |||||||||||    
T  34420816 gccttggcgcaacagtaaagttgttgtcacgtgactgaaaggtcac 34420771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 8247876 - 8247816
Alignment:
Q  134 aattataaggggaagccttagcgcaa-tggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| ||||| | |||| |||||| ||||||||||||||||| |||| |||||||||||    
T  8247876 aattatgaggggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcac 8247816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 19731000 - 19731032
Alignment:
Q  161 ggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| ||||||||||||||||||||||||||    
T  19731000 ggtaaatttgttgtcacgtgattgaaaggtcac 19731032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 12889381 - 12889436
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcacag 195  Q
    |||||| |||||| || ||| ||||||||||||||||||||| |||||||||||||    
T  12889381 aagggggagccttggcacaacggtaaagttgttgtcacgtgagtgaaaggtcacag 12889436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 13905159 - 13905106
Alignment:
Q  140 aaggggaagccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| | |||| |||||| |||||||||||||||| |||| |||||||||||    
T  13905159 aagggggaaccttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcac 13905106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 32728314 - 32728277
Alignment:
Q  162 gtaaagttgttgtcacgtgattgaaaggtcacagattc 199  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  32728314 gtaaagttgttgtcatgtgactgaaaggtcacagattc 32728277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 11849017 - 11849057
Alignment:
Q  147 agccttagcgcaatggtaaagttgttgtcacgtgattgaaa 187  Q
    ||||||||||||| ||||||||| ||||||||||| |||||    
T  11849017 agccttagcgcaacggtaaagttattgtcacgtgactgaaa 11849057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 47056 - 47010
Alignment:
Q  147 agccttagcgcaatggtaaagttgttgtcacgtgattgaaaggtcac 193  Q
    |||||| ||||||| ||||||||||||||| |||| |||||||||||    
T  47056 agccttggcgcaatagtaaagttgttgtcaggtgactgaaaggtcac 47010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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