View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11250_high_14 (Length: 203)

Name: NF11250_high_14
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11250_high_14
NF11250_high_14
[»] chr6 (11 HSPs)
chr6 (14-189)||(30955400-30955575)
chr6 (14-189)||(30945140-30945315)
chr6 (131-189)||(30961145-30961203)
chr6 (131-189)||(30992627-30992685)
chr6 (146-189)||(31224650-31224693)
chr6 (145-189)||(31145397-31145441)
chr6 (145-189)||(31171710-31171754)
chr6 (145-189)||(31189455-31189499)
chr6 (145-189)||(31201262-31201306)
chr6 (145-185)||(31229934-31229974)
chr6 (145-189)||(31214381-31214425)
[»] chr1 (3 HSPs)
chr1 (131-168)||(49215589-49215626)
chr1 (131-168)||(49714567-49714604)
chr1 (128-176)||(9495608-9495656)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 7e-88; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 30955575 - 30955400
Alignment:
Q  14 atggacatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtgttaacatcaa 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30955575 atggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtattaacatcaa 30955476  T
Q  114 tattgtttctcactccgaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955475 tattgtttctcactccaaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctcc 30955400  T

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Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 30945315 - 30945140
Alignment:
Q  14 atggacatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtgttaacatcaa 113  Q
    |||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30945315 atggccatcactatgtcagatctcaaatcactatccgtttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgttttaacatcaa 30945216  T
Q  114 tattgtttctcactccgaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945215 tattgtttctcactcccaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctcc 30945140  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 30961203 - 30961145
Alignment:
Q  131 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  30961203 accatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctcc 30961145  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 30992685 - 30992627
Alignment:
Q  131 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  30992685 accatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctcc 30992627  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 31224693 - 31224650
Alignment:
Q  146 atcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31224693 atcattccataactataaacatcagacttgtgtgaaactcctcc 31224650  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 31145397 - 31145441
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  31145397 catcattccataactataaacatcagatttgtgtgaaactcctcc 31145441  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 31171710 - 31171754
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  31171710 catcattccataactataaacatcagatttgtgtgaaactcctcc 31171754  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 31189455 - 31189499
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  31189455 catcattccataactataaacatcagatttgtgtgaaactcctcc 31189499  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 31201262 - 31201306
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  31201262 catcattccataactataaacatcggacttgtatgaaactcctcc 31201306  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 31229974 - 31229934
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaactc 185  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  31229974 catcattccataactataaacgtcagacttgtgcgaaactc 31229934  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 31214425 - 31214381
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaactcctcc 189  Q
    ||||||||| ||||||||||||||||||||||  ||||| |||||    
T  31214425 catcattccgtaactataaacatcagacttgtacgaaacgcctcc 31214381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 49215626 - 49215589
Alignment:
Q  131 accatctctaaaagcatcattccataactataaacatc 168  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  49215626 accatttctaaaaccatcattccataactataaacatc 49215589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 49714604 - 49714567
Alignment:
Q  131 accatctctaaaagcatcattccataactataaacatc 168  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  49714604 accatttctaaaaccatcattccataactataaacatc 49714567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 9495656 - 9495608
Alignment:
Q  128 ccgaccatctctaaaagcatcattccataactataaacatcagacttgt 176  Q
    |||||||||||||  | || ||||||| |||||||||||||||||||||    
T  9495656 ccgaccatctctagcaacaacattccaaaactataaacatcagacttgt 9495608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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