View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11250_high_4 (Length: 323)
Name: NF11250_high_4
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11250_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 34101229 - 34101524
Alignment:
| Q |
21 |
accgccaccgttccccgcaaaatcggcgtcgcagtcgacctctccgacgagagttcatacaccgtcacatgggcaatccaacaccacatccaaccacacg |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34101229 |
accgccacctttccccgcaaaatcggcgtcgcagtcgacctctccgacaagagttcatacaccgtcacatgggcaatccaacaccacatccaaccccacg |
34101328 |
T |
|
| Q |
121 |
acaccgtagtcctcctccacgtctgcaccacgactcacgacaacaacgacaccgacgaaatgaagaagatgaaaaactacttccacgtgtacacgatttc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34101329 |
acaccgtagtcctcctccacgtctgcaccacgacacacgacaacaacgacaccgacgaaatgaagaagatgaaaaactacttccacgtgtacacgatttc |
34101428 |
T |
|
| Q |
221 |
caaacttaacgattttgcgaaaccgttacttcaagcacagattcctcacaatctccatattgtgatggatcatgaaatcaaggagcgtctctgctt |
316 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34101429 |
caaacttgacgattttgcgaaatcgttacttcaagcacagattccttacaatctccacattgtgatggatcatgaaatcaaggagcgtctctgctt |
34101524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University