View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11250_high_5 (Length: 313)
Name: NF11250_high_5
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11250_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 8398556 - 8398277
Alignment:
| Q |
1 |
gttccgataaatgaatttgaatacgacataaaattctgtaaattcatatcgctgaagtttaaccgtgagtatcaatctaacctctcataatagattcaaa |
100 |
Q |
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| T |
8398556 |
gttccgataaatgaatttgaatacgacataaaattctgtaaattcatatcgctgaactttaa-------------tctaacctctcataatagattcaaa |
8398470 |
T |
|
| Q |
101 |
tatgagacagtccaaatatgatacaacacatcgtttccttgtttgggtaaaaatggaaccaacccaaaaattacacattgattagtggttaggctaaact |
200 |
Q |
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| T |
8398469 |
tatgagacagtccaaatatgatacaacacatcgtttccttgtttgggtaaaaattgaaccaacccaaaaattacacattgattagtggttaggctaaact |
8398370 |
T |
|
| Q |
201 |
acccaaaaagaatcaatgaaaaatgaagatgattggttcggattatgagtctttttaaaaccagtcacctggctgacatacacgattactatg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8398369 |
acccaaaaagaatcaatgaaaaatgaagatgattggttcggattatgagtctttttaaaaccagtcacctggctgacatacacaattactatg |
8398277 |
T |
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