View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11250_high_9 (Length: 274)

Name: NF11250_high_9
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11250_high_9
NF11250_high_9
[»] chr1 (23 HSPs)
chr1 (1-261)||(37841967-37842227)
chr1 (1-60)||(25006076-25006135)
chr1 (1-56)||(34952184-34952239)
chr1 (1-71)||(7218105-7218175)
chr1 (1-55)||(49888736-49888790)
chr1 (4-69)||(15515513-15515578)
chr1 (2-67)||(17269220-17269285)
chr1 (1-33)||(15687142-15687174)
chr1 (4-35)||(5243550-5243581)
chr1 (8-71)||(7472287-7472350)
chr1 (1-32)||(15784305-15784336)
chr1 (2-68)||(25005831-25005897)
chr1 (5-71)||(29793755-29793821)
chr1 (5-55)||(37295765-37295815)
chr1 (1-42)||(473133-473174)
chr1 (9-42)||(11218005-11218038)
chr1 (1-42)||(13809967-13810008)
chr1 (1-54)||(27738228-27738281)
chr1 (1-42)||(36070219-36070260)
chr1 (5-69)||(8130409-8130473)
chr1 (7-55)||(27976570-27976618)
chr1 (3-55)||(37842402-37842454)
chr1 (5-33)||(38018433-38018461)
[»] chr7 (10 HSPs)
chr7 (3-94)||(18350715-18350806)
chr7 (1-35)||(30180020-30180054)
chr7 (13-69)||(30812129-30812185)
chr7 (1-60)||(1417233-1417292)
chr7 (1-55)||(12110329-12110383)
chr7 (1-71)||(30456481-30456551)
chr7 (1-55)||(39967889-39967943)
chr7 (1-71)||(40689017-40689087)
chr7 (1-42)||(13960885-13960926)
chr7 (1-42)||(30496673-30496714)
[»] chr5 (12 HSPs)
chr5 (1-115)||(42646884-42646993)
chr5 (1-71)||(2568626-2568697)
chr5 (1-71)||(12425540-12425610)
chr5 (1-71)||(10272462-10272532)
chr5 (3-71)||(39105435-39105503)
chr5 (3-54)||(6587155-6587206)
chr5 (1-68)||(14932259-14932325)
chr5 (1-82)||(38047875-38047956)
chr5 (2-71)||(41016149-41016218)
chr5 (7-36)||(42569497-42569526)
chr5 (1-69)||(12975316-12975384)
chr5 (1-37)||(39809883-39809919)
[»] chr2 (16 HSPs)
chr2 (1-60)||(11513867-11513926)
chr2 (1-67)||(43199383-43199449)
chr2 (3-60)||(1625871-1625928)
chr2 (1-71)||(5043591-5043661)
chr2 (3-60)||(18066099-18066156)
chr2 (1-42)||(43199853-43199894)
chr2 (2-42)||(9750916-9750956)
chr2 (2-42)||(42907329-42907369)
chr2 (5-55)||(423552-423602)
chr2 (1-71)||(12313204-12313274)
chr2 (15-60)||(29628785-29628830)
chr2 (1-42)||(36114583-36114624)
chr2 (2-71)||(40279167-40279236)
chr2 (7-55)||(26626848-26626896)
chr2 (1-33)||(35459879-35459911)
chr2 (4-60)||(41851507-41851563)
[»] chr4 (13 HSPs)
chr4 (3-73)||(927447-927517)
chr4 (1-71)||(1706591-1706661)
chr4 (1-71)||(17884037-17884107)
chr4 (1-55)||(25885828-25885882)
chr4 (1-35)||(27043897-27043931)
chr4 (1-53)||(13949893-13949945)
chr4 (1-35)||(47946167-47946201)
chr4 (2-35)||(28300366-28300399)
chr4 (7-68)||(30066800-30066861)
chr4 (2-71)||(56480318-56480387)
chr4 (2-34)||(22539122-22539154)
chr4 (3-35)||(26520296-26520328)
chr4 (1-41)||(47119026-47119066)
[»] chr3 (14 HSPs)
chr3 (2-71)||(21367637-21367706)
chr3 (1-60)||(14145881-14145940)
chr3 (1-91)||(21872282-21872372)
chr3 (1-69)||(30956659-30956727)
chr3 (1-69)||(30972471-30972539)
chr3 (1-55)||(33405214-33405268)
chr3 (1-55)||(37795565-37795619)
chr3 (6-71)||(53789492-53789557)
chr3 (2-42)||(20257505-20257545)
chr3 (1-73)||(30573943-30574015)
chr3 (3-35)||(35328231-35328263)
chr3 (2-42)||(35450560-35450600)
chr3 (1-29)||(39921744-39921772)
chr3 (8-68)||(43875624-43875684)
[»] chr6 (12 HSPs)
chr6 (1-52)||(9093606-9093657)
chr6 (1-42)||(415273-415314)
chr6 (1-69)||(24836235-24836300)
chr6 (3-60)||(33828617-33828674)
chr6 (1-60)||(1402965-1403024)
chr6 (1-35)||(3785767-3785801)
chr6 (1-55)||(4006683-4006737)
chr6 (1-71)||(28621141-28621211)
chr6 (1-35)||(34611841-34611875)
chr6 (3-52)||(7485118-7485167)
chr6 (1-66)||(20671901-20671966)
chr6 (2-42)||(6909932-6909972)
[»] chr8 (10 HSPs)
chr8 (1-42)||(3537091-3537132)
chr8 (8-60)||(24558829-24558881)
chr8 (1-93)||(34770861-34770953)
chr8 (1-55)||(7918820-7918874)
chr8 (1-35)||(35374440-35374474)
chr8 (1-35)||(42237489-42237523)
chr8 (2-55)||(8062494-8062547)
chr8 (1-42)||(16210946-16210987)
chr8 (1-69)||(4558767-4558835)
chr8 (1-41)||(10758317-10758357)
[»] scaffold0475 (1 HSPs)
scaffold0475 (6-42)||(11815-11851)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-32)||(21348-21379)
scaffold0024 (1-32)||(58906-58937)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 37841967 - 37842227
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaacacttcataagctattttcataacatagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37841967 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaacacttcataagctattttcataccatagg 37842066  T
Q  101 ttcttccaaatagtcacagtgcttatgccaataatgtaatccaaacaggccctaattagtgcataaaaacaggttccctcattccaagaaaacacgaaaa 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37842067 ttcttccaaatagtcgcagtgcttatgccaataatgtaatccaaacaggccctaattagtgcataaaaacaggttccctcattccaagaaaacacgaaaa 37842166  T
Q  201 aattgaacatagagaacacagattggtaattacttgttcaagaatttgaaataaatgatgt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37842167 aattgaacatagagaacacagattggtaattacttgttcaagaatttgaaataaatgatgt 37842227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25006135 - 25006076
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||  ||||||||||| ||||    
T  25006135 taaaataaagtcaaattgttttcatataagctataagttgttttcataagctatcttgga 25006076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34952184 - 34952239
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatca 56  Q
    |||||||||||||||||||||||| ||||||| || ||||||  ||||||||||||    
T  34952184 taaaataaagttaaattgttttcgaataagctgtaagttgttttcataagctatca 34952239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7218175 - 7218105
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||  ||||| ||||| |||| | ||||||||    
T  7218175 taaaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaa 7218105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49888736 - 49888790
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    |||||||||||| |||||||||||||||||||||  ||||||  |||||||||||    
T  49888736 taaaataaagtttaattgttttcgtataagctattagttgttttcataagctatc 49888790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 15515513 - 15515578
Alignment:
Q  4 aataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatg 69  Q
    |||||| | ||| ||||||||||||||||||| ||||||  |||||| ||||||||| ||||||||    
T  15515513 aataaaatcaaaatgttttcgtataagctataagttgttttcataagttatcatggatagcttatg 15515578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 17269220 - 17269285
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagctta 67  Q
    |||||||||| ||||||||||| ||||||| ||| ||||||  ||||||||||| |||| ||||||    
T  17269220 aaaataaagtcaaattgttttcatataagcaataagttgttttcataagctatcctggagagctta 17269285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15687174 - 15687142
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagcta 33  Q
    |||||||||||||||||||||||||||||||||    
T  15687174 taaaataaagttaaattgttttcgtataagcta 15687142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 5243550 - 5243581
Alignment:
Q  4 aataaagttaaattgttttcgtataagctata 35  Q
    ||||||||||||||||||||||||||||||||    
T  5243550 aataaagttaaattgttttcgtataagctata 5243581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 7472287 - 7472350
Alignment:
Q  8 aagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||||||||||||| |||||| ||||| | ||||  ||||||||||| |||| ||||||||||    
T  7472287 aagttaaattgtttttgtataatctataagctgtttccataagctatcttggagagcttatgaa 7472350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 15784305 - 15784336
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagct 32  Q
    ||||||||||||||||||||||||||||||||    
T  15784305 taaaataaagttaaattgttttcgtataagct 15784336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 25005897 - 25005831
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttat 68  Q
    ||||| |||| || |||||||| ||||||||||| ||||||  ||||||||||| |||| |||||||    
T  25005897 aaaatgaagtcaacttgttttcatataagctataagttgttttcataagctatcctggagagcttat 25005831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 29793755 - 29793821
Alignment:
Q  5 ataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    |||||||||| |||||||||||||||||||| ||||    ||||||||||| | || ||||||||||    
T  29793755 ataaagttaagttgttttcgtataagctataagttgagttcataagctatcttcgagagcttatgaa 29793821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 37295815 - 37295765
Alignment:
Q  5 ataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    ||||||||||||||||||||| ||||||||| ||||||  ||||| |||||    
T  37295815 ataaagttaaattgttttcgtttaagctataagttgttttcataacctatc 37295765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 473133 - 473174
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    ||||||||||||||||||||||||| || |||||| ||||||    
T  473133 taaaataaagttaaattgttttcgtgtatgctataagttgtt 473174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 11218038 - 11218005
Alignment:
Q  9 agttaaattgttttcgtataagctatatgttgtt 42  Q
    ||||||||||||||||||||||||||| ||||||    
T  11218038 agttaaattgttttcgtataagctataagttgtt 11218005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13809967 - 13810008
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    |||||||||||||||||||||| ||||| ||||||| |||||    
T  13809967 taaaataaagttaaattgtttttgtatatgctatatattgtt 13810008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27738281 - 27738228
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctat 54  Q
    ||||||||||| ||||||||||| |||||||||||  |||||  ||||||||||    
T  27738281 taaaataaagtcaaattgttttcatataagctataatttgttttcataagctat 27738228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36070219 - 36070260
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    ||||||||||||||||||| |||| |||||||||| ||||||    
T  36070219 taaaataaagttaaattgtcttcggataagctataagttgtt 36070260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 8130409 - 8130473
Alignment:
Q  5 ataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatg 69  Q
    ||||||| ||| |||||||  |||||||||| ||||||  |||||||||||||||| | ||||||    
T  8130409 ataaagtcaaactgttttcacataagctataagttgttttcataagctatcatggaaaacttatg 8130473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 27976570 - 27976618
Alignment:
Q  7 aaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    |||||||||||||||| ||||| |||||| ||||||  |||||||||||    
T  27976570 aaagttaaattgtttttgtatatgctataagttgttttcataagctatc 27976618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 37842454 - 37842402
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    ||||||||||||| ||| |||| |||||||||| ||||||  |||||||||||    
T  37842454 aaataaagttaaactgtgttcgaataagctataagttgttttcataagctatc 37842402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 38018461 - 38018433
Alignment:
Q  5 ataaagttaaattgttttcgtataagcta 33  Q
    |||||||||||||||||||||||||||||    
T  38018461 ataaagttaaattgttttcgtataagcta 38018433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 18350806 - 18350715
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaacacttcataagctattttcataa 94  Q
    |||| ||| ||||||||||||||||||| |||| | ||||  |||||||||||||||| ||||||||||||  |  ||||||||||||||||    
T  18350806 aaattaagctaaattgttttcgtataagttataagctgttttcataagctatcatggagagcttatgaacatgttttaagctattttcataa 18350715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30180020 - 30180054
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctata 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30180020 taaaataaagttaaattgttttcgtataagctata 30180054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 30812129 - 30812185
Alignment:
Q  13 aaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatg 69  Q
    ||||||||||||||||||||||| | ||||  ||| |||||||||||| ||||||||    
T  30812129 aaattgttttcgtataagctataagctgttttcattagctatcatggagagcttatg 30812185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1417233 - 1417292
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    ||||||||||| ||||||||||| ||||||| ||| ||||||  ||||||||| ||||||    
T  1417233 taaaataaagtcaaattgttttcatataagcaataagttgttttcataagctagcatgga 1417292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12110329 - 12110383
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    ||||||||||| |||||||||| |||||||||||| | ||||  |||||||||||    
T  12110329 taaaataaagtcaaattgttttggtataagctataagctgttttcataagctatc 12110383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30456551 - 30456481
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||||||||| ||||||||||| |||||| |||| || |||  ||||| ||||| |||| ||||||||||    
T  30456551 taaaataaagtcaaattgttttcatataagttataagtggttttcataaactatcttggagagcttatgaa 30456481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39967889 - 39967943
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    ||||||||| ||||||||||||||||  ||||||| ||||||  |||||||||||    
T  39967889 taaaataaacttaaattgttttcgtactagctataagttgttttcataagctatc 39967943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40689087 - 40689017
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||||||||||||||| ||||| ||||||||||| | |||   ||||||||||| |||| | ||||||||    
T  40689087 taaaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggataacttatgaa 40689017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13960885 - 13960926
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    |||||||||||||||||||||| |||||| ||||| ||||||    
T  13960885 taaaataaagttaaattgtttttgtataacctataagttgtt 13960926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30496673 - 30496714
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||    
T  30496673 taaaataaagtcaaattgttttcgtataacctataggttgtt 30496714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 42646884 - 42646993
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaacacttcataagctattttcataacatagg 100  Q
    |||||| ||||||||||||||| || ||||||||| | ||||  ||||| | ||| |||| ||||||||||||  |||||||||||||||||||     |    
T  42646884 taaaattaagttaaattgtttttgtttaagctataaggtgttttcataaacgatcttggagagcttatgaacatgtcataagctattttcataa-----g 42646978  T
Q  101 ttcttccaaatagtc 115  Q
    |||||||||||||||    
T  42646979 ttcttccaaatagtc 42646993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2568626 - 2568697
Alignment:
Q  1 taaaataaagttaaattgtttt-cgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||  |||||||||||||||| |||| |||||    
T  2568626 taaaacaaagttaaattgtttttcgtataagctataagttgttttcataagctatcatggagagctaatgaa 2568697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12425540 - 12425610
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||||||||||||||||||||||||||||||||| | ||||  || |||||||| |||| | ||||||||    
T  12425540 taaaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaa 12425610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10272532 - 10272462
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    |||||| |||| ||||||||||||||||||||||| ||||||  ||||||| ||| |||| || |||||||    
T  10272532 taaaattaagtcaaattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaa 10272462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 39105435 - 39105503
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    |||| ||||||||||||||||||||||||||||   ||||  ||||||||||| |||| | ||||||||    
T  39105435 aaatgaagttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaa 39105503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 6587206 - 6587155
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctatatgttgttcgcataagctat 54  Q
    ||||||| || |||||||||||||||||||||| ||||||  ||||||||||    
T  6587206 aaataaacttcaattgttttcgtataagctataagttgttttcataagctat 6587155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14932259 - 14932325
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttat 68  Q
    |||||||||||||||||||||| |||||||||||| | ||||   ||||| ||||||||| |||||||    
T  14932259 taaaataaagttaaattgtttt-gtataagctataagctgttgttataagttatcatggaaagcttat 14932325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38047956 - 38047875
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaacacttcataag 82  Q
    ||||||||||| ||||| ||||| ||||  ||||||| ||||  ||||||||||| |||| |||||||| |||  |||||||    
T  38047956 taaaataaagtcaaattattttcatatatactatatgctgttttcataagctatcctggagagcttatggacatgtcataag 38047875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 41016149 - 41016218
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    |||||||| | ||| ||||||| ||||||||||| ||||||  || |||| |||||||| ||||||||||    
T  41016149 aaaataaattcaaactgttttcatataagctataagttgttttcacaagccatcatggaaagcttatgaa 41016218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 42569526 - 42569497
Alignment:
Q  7 aaagttaaattgttttcgtataagctatat 36  Q
    ||||||||||||||||||||||||||||||    
T  42569526 aaagttaaattgttttcgtataagctatat 42569497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12975316 - 12975384
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatg 69  Q
    ||||||||| | ||||||||||| ||||||||||| | |||   ||||||||||| |||| ||||||||    
T  12975316 taaaataaaatcaaattgttttcatataagctataagctgtgttcataagctatcttggagagcttatg 12975384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39809883 - 39809919
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatg 37  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  39809883 taaaataaagtcaaattgttttcgtataagttatatg 39809919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11513867 - 11513926
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  11513867 taaaataaagtcaaattgttttcatataagctataagttgttttcataagctatcatgga 11513926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 43199383 - 43199449
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagctta 67  Q
    ||||||||||||||||| | ||||||||||||||| ||||||  ||||| ||||| |||||||||||    
T  43199383 taaaataaagttaaattatcttcgtataagctataagttgttttcataaactatcctggacagctta 43199449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 1625871 - 1625928
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    |||||||||||||||||||||||||||| |||| ||||||  ||||||||||| ||||    
T  1625871 aaataaagttaaattgttttcgtataagttataagttgttttcataagctatcttgga 1625928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5043661 - 5043591
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||||||||| ||| ||||||| ||||||||| | ||||||  |||||||||||||||| |||| |||||    
T  5043661 taaaataaagtcaaactgttttcatataagctagaagttgttttcataagctatcatggatagctaatgaa 5043591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 18066099 - 18066156
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    ||||||||||||||||||||| ||||||||||| | ||||  ||||||||||| ||||    
T  18066099 aaataaagttaaattgttttcatataagctataagctgttttcataagctatcttgga 18066156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43199894 - 43199853
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  43199894 taaaataaagttaaattgtttttgtataagctataagttgtt 43199853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 9750916 - 9750956
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  9750916 aaaataaagttaaattgttttcttataagctataagttgtt 9750956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 42907329 - 42907369
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  42907329 aaaataaagttaaattgttttcgtttaagctataagttgtt 42907369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 423552 - 423602
Alignment:
Q  5 ataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    |||||||| ||| ||||| |||||||||||||||||||  |||||||||||    
T  423552 ataaagtttaatagttttggtataagctatatgttgttttcataagctatc 423602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12313274 - 12313204
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||||||||||||||| |||| || ||||||| |  |||||  ||||||||||| |||| ||||||||||    
T  12313274 taaaataaagttaaattatttttgtttaagctacaaattgtttacataagctatcttggagagcttatgaa 12313204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 29628830 - 29628785
Alignment:
Q  15 attgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    |||||||| |||||||||||| ||||||| ||||||||||| ||||    
T  29628830 attgtttttgtataagctataagttgttctcataagctatcttgga 29628785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36114624 - 36114583
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    |||||||||||||||||||||| |||||||| ||| ||||||    
T  36114624 taaaataaagttaaattgtttttgtataagcaataagttgtt 36114583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 40279167 - 40279236
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||  ||||||||||  |||| | ||||||||    
T  40279167 aaaatgaagttaaattgttttggtataagatataagttgttttcataagctatgttggagaacttatgaa 40279236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 26626848 - 26626896
Alignment:
Q  7 aaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    ||||||||||||||||||||||||||| | | ||||  |||||||||||    
T  26626848 aaagttaaattgttttcgtataagctagaagctgttttcataagctatc 26626896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35459879 - 35459911
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagcta 33  Q
    ||||||||||| |||||||||||||||||||||    
T  35459879 taaaataaagtcaaattgttttcgtataagcta 35459911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 41851507 - 41851563
Alignment:
Q  4 aataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    ||||||||||||||||||| ||||| |||||| ||||||  || |||||||| ||||    
T  41851507 aataaagttaaattgtttttgtatatgctataagttgttttcagaagctatcttgga 41851563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 927447 - 927517
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaaca 73  Q
    ||||||||| ||| ||||||| |||||||||||  ||||| ||||||||||||||||| ||||| ||||||    
T  927447 aaataaagtcaaactgttttcatataagctataacttgtttgcataagctatcatggaaagcttttgaaca 927517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1706591 - 1706661
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    |||||||| ||| ||||||||||||| |||||||| | ||||  ||||| ||||| |||||||||||||||    
T  1706591 taaaataatgttcaattgttttcgtagaagctataagctgttttcataaactatcttggacagcttatgaa 1706661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17884037 - 17884107
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    |||||||||||||||||||||| ||||||| |||  ||||||  ||||||||||  |||| ||||||||||    
T  17884037 taaaataaagttaaattgtttttgtataagttatcagttgttttcataagctatattggagagcttatgaa 17884107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25885828 - 25885882
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    ||||||||||||||||||||||||| ||||||||| ||||||  |||||| ||||    
T  25885828 taaaataaagttaaattgttttcgtgtaagctataagttgttttcataagttatc 25885882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27043931 - 27043897
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctata 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27043931 taaaataaagttaaattgttttcgtataagctata 27043897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13949945 - 13949893
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagcta 53  Q
    ||||||||||| ||||||||||| ||||||||||| |||||| | ||||||||    
T  13949945 taaaataaagtcaaattgttttcatataagctataagttgtttgtataagcta 13949893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47946167 - 47946201
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctata 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  47946167 taaaatgaagttaaattgttttcgtataagctata 47946201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 28300399 - 28300366
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctata 35  Q
    ||||||||||||||||||||| ||||||||||||    
T  28300399 aaaataaagttaaattgtttttgtataagctata 28300366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 30066861 - 30066800
Alignment:
Q  7 aaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttat 68  Q
    ||||||| ||||||||||||||| || || | ||||| ||||||||||| |||| |||||||    
T  30066861 aaagttacattgttttcgtataaactgtaagctgttctcataagctatcttggagagcttat 30066800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 56480318 - 56480387
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||||||||||||||||||  ||||||| |||| | ||||  ||||| ||||| |||| ||||||||||    
T  56480318 aaaataaagttaaattgtttatgtataagttataagctgttttcataaactatcttggagagcttatgaa 56480387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 22539154 - 22539122
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctat 34  Q
    ||||||||||||||||||||| |||||||||||    
T  22539154 aaaataaagttaaattgttttagtataagctat 22539122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 26520328 - 26520296
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctata 35  Q
    ||||||||||||||||||||||| |||||||||    
T  26520328 aaataaagttaaattgttttcgtgtaagctata 26520296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47119066 - 47119026
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgt 41  Q
    ||||| ||||||||||||||||| ||||||||||| |||||    
T  47119066 taaaacaaagttaaattgttttcatataagctataagttgt 47119026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 21367637 - 21367706
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    ||||||||||||||||||||||||||||  |||| ||||||  ||||||||||| |||| | ||||||||    
T  21367637 aaaataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaa 21367706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14145881 - 14145940
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    |||||||||||||||||||||||||||| |||||| ||| ||  ||||||||||| ||||    
T  14145881 taaaataaagttaaattgttttcgtatatgctataagttattttcataagctatcttgga 14145940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 21872372 - 21872282
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaacacttcataagctattttca 91  Q
    |||||||| || ||||| ||||  ||||||||||| ||||||  ||||||||||| |||| || ||||| |||  ||||||||||||||||    
T  21872372 taaaataaggtcaaatttttttgatataagctataagttgttttcataagctatcctggaaagtttatggacatgtcataagctattttca 21872282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30956727 - 30956659
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatg 69  Q
    |||||||||||||||||||||| ||||| |||||| ||||||  || |||||||| |||| | ||||||    
T  30956727 taaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatg 30956659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30972539 - 30972471
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatg 69  Q
    |||||||||||||||||||||| ||||| |||||| ||||||  || |||||||| |||| | ||||||    
T  30972539 taaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatg 30972471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33405268 - 33405214
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    |||||||||||||| |||||||| ||||||||||| | ||||  |||||||||||    
T  33405268 taaaataaagttaatttgttttcatataagctataagctgttttcataagctatc 33405214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37795565 - 37795619
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    |||||||| ||||||||||||||||||||||||||   ||||  |||||||||||    
T  37795565 taaaataaggttaaattgttttcgtataagctataaactgtttccataagctatc 37795619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 53789557 - 53789492
Alignment:
Q  6 taaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    |||| ||||| |||||| ||||| |||||| ||||||  |||||||||||||||| | ||||||||    
T  53789557 taaaattaaaatgttttggtatatgctataagttgttatcataagctatcatggagaacttatgaa 53789492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 20257505 - 20257545
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    ||||||||||||||||||||| ||||| |||||| ||||||    
T  20257505 aaaataaagttaaattgtttttgtatatgctataagttgtt 20257545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 30574015 - 30573943
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaaca 73  Q
    |||||||||||||| || ||||  ||||| ||||||| ||||  ||||||||||| |||| |||| |||||||    
T  30574015 taaaataaagttaagttttttttttataatctatatgatgttttcataagctatcttggagagctgatgaaca 30573943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 35328263 - 35328231
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctata 35  Q
    |||||||||||||||||||||||||||| ||||    
T  35328263 aaataaagttaaattgttttcgtataagttata 35328231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 35450560 - 35450600
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    |||||||||| ||||||||||| ||||||||||| ||||||    
T  35450560 aaaataaagtaaaattgttttcttataagctataagttgtt 35450600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39921772 - 39921744
Alignment:
Q  1 taaaataaagttaaattgttttcgtataa 29  Q
    |||||||||||||||||||||||||||||    
T  39921772 taaaataaagttaaattgttttcgtataa 39921744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 43875624 - 43875684
Alignment:
Q  8 aagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttat 68  Q
    |||| ||| |||| || ||||||||||| ||||||  |||||||||||||||| |||||||    
T  43875624 aagtcaaactgttctcatataagctataagttgttttcataagctatcatggagagcttat 43875684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9093657 - 9093606
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagct 52  Q
    ||||||||||||||||||||||||||||||||||| | ||||  ||||||||    
T  9093657 taaaataaagttaaattgttttcgtataagctataagctgttttcataagct 9093606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 415273 - 415314
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  415273 taaaacaaagttaaattgttttcgtataagctataagttgtt 415314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24836300 - 24836235
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatg 69  Q
    ||||||||||| ||||||||||||||||| ||||| ||| ||||  |||||||||||||| ||||||||    
T  24836300 taaaataaagtcaaattgttttcgtataaactataagtt-ttcg--taagctatcatggagagcttatg 24836235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 33828617 - 33828674
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    ||||||||| |||||||||||||||||| |||| ||||||   |||||||||||||||    
T  33828617 aaataaagtcaaattgttttcgtataagttataagttgttttaataagctatcatgga 33828674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1402965 - 1403024
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    ||||||||||||||| | ||||| |||||||||||  |||||  ||||||||||||||||    
T  1402965 taaaataaagttaaactattttcatataagctataaattgttttcataagctatcatgga 1403024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3785801 - 3785767
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctata 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  3785801 taaaataaagttaaactgttttcgtataagctata 3785767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4006683 - 4006737
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    ||||||||||| ||||||||||  ||||||||||| ||||||  |||||||||||    
T  4006683 taaaataaagtcaaattgtttttatataagctataagttgttttcataagctatc 4006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 28621211 - 28621141
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaa 71  Q
    |||||||||||||||||||||| |||||||||| | | ||||  |||| |||||| |||  ||||||||||    
T  28621211 taaaataaagttaaattgtttttgtataagctacaagatgtttacataggctatcttggcaagcttatgaa 28621141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34611841 - 34611875
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctata 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  34611841 taaaataaagttaaattgttttcttataagctata 34611875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 7485167 - 7485118
Alignment:
Q  3 aaataaagttaaattgttttcgtataagctatatgttgttcgcataagct 52  Q
    ||||||||||||||| ||||| ||||||||||| ||||||  ||||||||    
T  7485167 aaataaagttaaatttttttcatataagctataagttgttttcataagct 7485118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20671966 - 20671901
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagctt 66  Q
    ||||||||||| |||||||||||||||||||| ||  |||||  ||||| ||||||| || |||||    
T  20671966 taaaataaagtcaaattgttttcgtataagctttaaattgttttcataaactatcatagagagctt 20671901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 6909972 - 6909932
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    ||||||||||||||||||||| ||||| |||||| ||||||    
T  6909972 aaaataaagttaaattgtttttgtatatgctataagttgtt 6909932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3537132 - 3537091
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  3537132 taaaataaagtcaaattgttttcgtataagctataggttgtt 3537091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 24558829 - 24558881
Alignment:
Q  8 aagttaaattgttttcgtataagctatatgttgttcgcataagctatcatgga 60  Q
    |||||||||| ||||||||||||||||| ||||||  ||||||||||| ||||    
T  24558829 aagttaaattattttcgtataagctataagttgttttcataagctatcttgga 24558881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34770861 - 34770953
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatgaacacttcataagctattttcata 93  Q
    ||||||||||| ||||||||||| | ||||||||| ||||||  ||||||||||| | || || | ||| |||  ||||||||| ||||||||    
T  34770861 taaaataaagtcaaattgttttcatttaagctataagttgttttcataagctatcctagagagttcatggacatgtcataagctgttttcata 34770953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7918874 - 7918820
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    ||||||||||||||||| ||||| | ||||||||| ||||||  |||||||||||    
T  7918874 taaaataaagttaaatttttttcttgtaagctataagttgttttcataagctatc 7918820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35374474 - 35374440
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctata 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  35374474 taaaataaagttaaattgttttcatataagctata 35374440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42237523 - 42237489
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctata 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  42237523 taaaataaagttaaattgttttcatataagctata 42237489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 8062494 - 8062547
Alignment:
Q  2 aaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatc 55  Q
    |||| ||||| ||||||||||| ||||||||||| | ||||| |||||||||||    
T  8062494 aaaaaaaagtcaaattgttttcatataagctataagatgttctcataagctatc 8062547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16210987 - 16210946
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgtt 42  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||    
T  16210987 taaaataaagttacattgttttcatataagctataagttgtt 16210946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4558767 - 4558835
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgttcgcataagctatcatggacagcttatg 69  Q
    ||||||||||||||||| ||||| |||| |||||| | ||||  ||||||||||| | || ||||||||    
T  4558767 taaaataaagttaaattattttcatatatgctataagctgtttccataagctatcctagagagcttatg 4558835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10758357 - 10758317
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagctatatgttgt 41  Q
    |||||||||||||||||||||| ||||| |||||| |||||    
T  10758357 taaaataaagttaaattgtttttgtatatgctataagttgt 10758317  T

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Target: scaffold0475 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 11851 - 11815
Alignment:
Q  6 taaagttaaattgttttcgtataagctatatgttgtt 42  Q
    |||||||||||||||||||||||||||||| ||||||    
T  11851 taaagttaaattgttttcgtataagctataagttgtt 11815  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 21379 - 21348
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagct 32  Q
    ||||||||||||||||||||||||||||||||    
T  21379 taaaataaagttaaattgttttcgtataagct 21348  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 58906 - 58937
Alignment:
Q  1 taaaataaagttaaattgttttcgtataagct 32  Q
    ||||||||||||||||||||||||||||||||    
T  58906 taaaataaagttaaattgttttcgtataagct 58937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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