View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11250_low_1 (Length: 734)
Name: NF11250_low_1
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11250_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 22775184 - 22774974
Alignment:
| Q |
11 |
cacagagcaatgacaaataaaaccaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatattgaagttgatccctttgatcatatgatag |
110 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |
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| T |
22775184 |
cacagagcaatgacaaataaaaacaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatgttgaagtggagccctttgatcatatgatag |
22775085 |
T |
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| Q |
111 |
atgctcaaaaccctaagatgtaccagaaagtcttgtatggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggc |
210 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22775084 |
atgctcaaaaccctaagatgtaccagaaagtgttgtatggagattatttgaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggc |
22774985 |
T |
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| Q |
211 |
aaggataaagg |
221 |
Q |
| |
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|| |||||||| |
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| T |
22774984 |
aaagataaagg |
22774974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 22782687 - 22782418
Alignment:
| Q |
11 |
cacagagcaatgacaaataaaaccaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatattgaagttgatccctttgatcatatgatag |
110 |
Q |
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||||||||| |||||||||| | |||||||||||||||| ||||| ||||| |||| |||| ||||||| |||||||||| || ||| |||||||||||| |
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| T |
22782687 |
cacagagcagtgacaaataagaacaagagaaggacttctaatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag |
22782588 |
T |
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| Q |
111 |
atgctcaaaaccctaagatgtaccagaaagtcttgtatggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggc |
210 |
Q |
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| T |
22782587 |
atgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgc |
22782488 |
T |
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| Q |
211 |
aaggataaaggaacatataatagagaaataacacatcaaagaaaaggtcaagtttgaaaaaatgaggaaa |
280 |
Q |
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| T |
22782487 |
aaggataaaggaacaagtaatagagaaataaaaaataaaagaaaatggacagtttgagaaaatgaggaaa |
22782418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 22778555 - 22778319
Alignment:
| Q |
19 |
aatgacaaataaaaccaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatattgaagttgatccctttgatcatatgatagatgctcaa |
118 |
Q |
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|||||||||| | | ||| ||||||| |||| ||||| ||||| | || ||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
22778555 |
aatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatcatatgatagatgctcaa |
22778456 |
T |
|
| Q |
119 |
aaccctaagatgtaccagaaagtcttgtatggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggcaaggataa |
218 |
Q |
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||||| |||||||||||||||||| ||||||||||||||| ||||| ||| | ||||||||||||||| ||||||||||||| |||||||||| ||||| |
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| T |
22778455 |
aaccccaagatgtaccagaaagtcaagtatggagattatttgaggcattccttaaagagaaaaatggagcgaaaaacacacaccgatgtggcaaagataa |
22778356 |
T |
|
| Q |
219 |
aggaacatataatagagaaataacacatcaaagaaaa |
255 |
Q |
| |
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|||||||| |||||| || |||||| |||||||||| |
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| T |
22778355 |
aggaacatgtaatagtgacataacaactcaaagaaaa |
22778319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 22765364 - 22765140
Alignment:
| Q |
11 |
cacagagcaatgacaaataaaaccaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatattgaagttgatccctttgatcatatgatag |
110 |
Q |
| |
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||||||||| | |||||||| | ||| ||||||||||| |||||| ||||| || | |||||||||||| ||||| |||| || |||||||||||||||| |
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| T |
22765364 |
cacagagcagtaacaaataagaacaaaagaaggacttcccatgcatcatttttgatccctcgagatgatgttgaaattgagccatttgatcatatgatag |
22765265 |
T |
|
| Q |
111 |
atgctcaaaaccctaagatgtaccagaaagtcttgtatggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggc |
210 |
Q |
| |
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||||| ||||| | || || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
22765264 |
atgctgaaaacaccaaaatttaccagaaagtcaagtttggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacatattgatgtggc |
22765165 |
T |
|
| Q |
211 |
aaggataaaggaacatataatagag |
235 |
Q |
| |
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| |||||||||||| |||||||| |
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| T |
22765164 |
caagataaaggaacagttaatagag |
22765140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 16085070 - 16085304
Alignment:
| Q |
23 |
acaaataaaaccaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatattgaagttgatccctttgatcatatgatagatgctcaaaacc |
122 |
Q |
| |
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|||||||| | ||||| ||||| ||| |||||||||||||||| |||||||| ||| |||||||||| |||||||| ||||||||| ||||| |||||| |
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| T |
16085070 |
acaaataagaacaagaaaaggatgtcttatgcaacatttgtgttccctcgagaagatgttgaagttgagccctttgaccatatgataaatgctgaaaacc |
16085169 |
T |
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| Q |
123 |
ctaagatgtaccagaaagtcttgtatggagattatttaaggcaatcc-atgaagagaaaaatggagggaaaaacacacactgatgtggcaaggataaagg |
221 |
Q |
| |
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| || ||||||||||||||| ||||||||||||||| ||| ||||| |||| |||| | ||||||||||||| |||||||| ||||||||| ||||| |
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| T |
16085170 |
ccaaaatgtaccagaaagtcaggtatggagattatttgagggaatcctttgaaaagaatataggagggaaaaacaaacactgatatggcaaggagaaagg |
16085269 |
T |
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| Q |
222 |
aacatataatagagaaataacacatcaaagaaaag |
256 |
Q |
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|| || ||||||| ||||||| || |||||||| |
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| T |
16085270 |
aatatgtaatagaagaataacaaatttaagaaaag |
16085304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 23278382 - 23278598
Alignment:
| Q |
7 |
ggagcacagagcaatgacaaataaaaccaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatattgaagttgatccctttgatcatatg |
106 |
Q |
| |
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|||||| ||||| ||||||||||| | |||||||||||||||| || | ||||| |||| || || |||||| |||| ||| ||||||||||||||| |
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| T |
23278382 |
ggagcatagagctatgacaaataagaacaagagaaggacttcttttgtatcatttttgttcccccgggatgatgctgaacttgggccctttgatcatatg |
23278481 |
T |
|
| Q |
107 |
atagatgctcaaaaccctaagatgtaccagaaagtcttgtatggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacacactgatg |
206 |
Q |
| |
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||||||| |||||| || ||||||||| || || || |||||||| ||||| ||||| || |||| || ||| |||| ||||||||||| || |||| |
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| T |
23278482 |
atagatgatcaaaatcccaagatgtacaaggaaatcacttatggagagtatttgaggcacaccttgaataggaaattggaaggaaaaacacagaccgatg |
23278581 |
T |
|
| Q |
207 |
tggcaaggataaaggaa |
223 |
Q |
| |
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| | | |||||||||| |
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| T |
23278582 |
cgacgaagataaaggaa |
23278598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 626 - 696
Target Start/End: Complemental strand, 22774698 - 22774628
Alignment:
| Q |
626 |
agagatttgcacattgatcgtctgatcaccatttgatcttcaccacatggtggtgattgattgcataaggt |
696 |
Q |
| |
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||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22774698 |
agagatttgcagattgatcatgagatcaccgtttgatcttcaccacatggtggtgattgattgcataaggt |
22774628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 522 - 577
Target Start/End: Complemental strand, 22774810 - 22774755
Alignment:
| Q |
522 |
aattcatatacagccggagaattgaaaatgcgatggaggatggcagcggcagctac |
577 |
Q |
| |
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||||||||||||||||||||| || ||| |||||||||| ||||||||||||||| |
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| T |
22774810 |
aattcatatacagccggagaagtggaaacacgatggaggacggcagcggcagctac |
22774755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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