View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11250_low_11 (Length: 256)

Name: NF11250_low_11
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11250_low_11
NF11250_low_11
[»] chr3 (15 HSPs)
chr3 (9-185)||(8431406-8431582)
chr3 (42-185)||(43073034-43073178)
chr3 (39-185)||(31525360-31525507)
chr3 (48-185)||(28934724-28934861)
chr3 (42-179)||(10454279-10454422)
chr3 (33-169)||(44656229-44656369)
chr3 (42-161)||(47820897-47821022)
chr3 (42-179)||(9358743-9358883)
chr3 (48-185)||(52076066-52076209)
chr3 (42-165)||(53349401-53349527)
chr3 (48-185)||(20701152-20701292)
chr3 (48-172)||(28956952-28957079)
chr3 (48-179)||(42881885-42882019)
chr3 (42-161)||(46750212-46750333)
chr3 (42-101)||(55166895-55166955)
[»] chr1 (14 HSPs)
chr1 (1-169)||(31833854-31834019)
chr1 (39-184)||(12172951-12173097)
chr1 (42-160)||(46757306-46757425)
chr1 (42-179)||(26990601-26990739)
chr1 (42-185)||(19472797-19472944)
chr1 (48-185)||(8462958-8463097)
chr1 (42-161)||(42442019-42442142)
chr1 (42-179)||(47028931-47029072)
chr1 (42-185)||(38548673-38548821)
chr1 (48-167)||(41955891-41956016)
chr1 (42-132)||(43268645-43268739)
chr1 (42-179)||(26384960-26385100)
chr1 (48-185)||(28447722-28447863)
chr1 (43-184)||(43460698-43460848)
[»] chr7 (13 HSPs)
chr7 (42-179)||(46691839-46691981)
chr7 (48-185)||(30655586-30655727)
chr7 (48-185)||(22197675-22197816)
chr7 (48-185)||(22240005-22240146)
chr7 (48-168)||(36615808-36615927)
chr7 (39-184)||(31424761-31424912)
chr7 (48-185)||(1039051-1039191)
chr7 (48-161)||(49035865-49035983)
chr7 (45-167)||(41702867-41702992)
chr7 (48-157)||(33320710-33320817)
chr7 (39-179)||(32678937-32679083)
chr7 (108-185)||(42598053-42598130)
chr7 (42-179)||(43397640-43397781)
[»] chr2 (6 HSPs)
chr2 (36-172)||(38908663-38908800)
chr2 (42-169)||(41419617-41419748)
chr2 (42-179)||(14732334-14732473)
chr2 (42-160)||(41378216-41378332)
chr2 (48-185)||(22649053-22649193)
chr2 (108-161)||(43356750-43356803)
[»] chr8 (13 HSPs)
chr8 (42-185)||(40930818-40930961)
chr8 (49-185)||(13959207-13959347)
chr8 (42-181)||(24200614-24200753)
chr8 (42-179)||(25829259-25829399)
chr8 (42-186)||(5200469-5200615)
chr8 (42-178)||(22839250-22839391)
chr8 (42-185)||(38086402-38086551)
chr8 (48-115)||(10124866-10124935)
chr8 (42-185)||(30836116-30836272)
chr8 (136-185)||(7845135-7845184)
chr8 (108-184)||(44362918-44362994)
chr8 (121-185)||(584123-584187)
chr8 (42-101)||(7845080-7845138)
[»] chr4 (11 HSPs)
chr4 (48-169)||(16572074-16572198)
chr4 (50-184)||(47571560-47571694)
chr4 (42-185)||(32183275-32183425)
chr4 (83-179)||(15186975-15187072)
chr4 (45-179)||(55133102-55133233)
chr4 (42-179)||(25641263-25641407)
chr4 (41-179)||(16662301-16662441)
chr4 (43-179)||(42390766-42390906)
chr4 (185-244)||(5341706-5341765)
chr4 (185-244)||(25222218-25222277)
chr4 (135-185)||(45511390-45511440)
[»] chr5 (10 HSPs)
chr5 (42-161)||(23172985-23173107)
chr5 (42-167)||(22887211-22887337)
chr5 (42-185)||(9931785-9931935)
chr5 (33-167)||(25539810-25539947)
chr5 (48-185)||(10431063-10431204)
chr5 (48-168)||(819134-819254)
chr5 (42-184)||(3677779-3677924)
chr5 (57-185)||(42241577-42241708)
chr5 (48-100)||(2292168-2292222)
chr5 (127-185)||(9597742-9597800)
[»] chr6 (8 HSPs)
chr6 (48-185)||(33112703-33112844)
chr6 (42-179)||(10246910-10247049)
chr6 (48-186)||(11546772-11546912)
chr6 (41-176)||(6575720-6575860)
chr6 (42-184)||(15859093-15859244)
chr6 (48-185)||(34761167-34761306)
chr6 (42-101)||(33984753-33984814)
chr6 (127-170)||(12754422-12754465)
[»] scaffold0209 (1 HSPs)
scaffold0209 (121-185)||(12883-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (127-183)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 8431582 - 8431406
Alignment:
Q  9 tttttgtgtccggtagttagtgccttagtgttagggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttat 108  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8431582 tttttttgaccggtagttagtgccttagtgttggggtggtttttaaggggtttttgttcgagccggtgttttgttgcaaccgatttccccttgtgtttat 8431483  T
Q  109 tttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||    
T  8431482 tttttccatccgagcttgttagtgcatcttgcacgggcttcttgatcaataatattttgccgtttcaaaaaaaaaaa 8431406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 43073178 - 43073034
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtt-tattttttccatccgagcttgttagtgcatcttgc 140  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| || | ||||||||| || ||||| ||||||||||||||    
T  43073178 gggtggtttttaaggggtttttgttcgagccggtgttttaaggcaaccgatttccccttgtattcttttttttccacccaagcttattagtgcatcttgc 43073079  T
Q  141 acgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||||||| |||||||||||| |||||||| |||||||| |||||    
T  43073078 acgggcttgttggttaataatattttgccgattcaaaaaaaaaaa 43073034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 31525360 - 31525507
Alignment:
Q  39 ttagggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatct 137  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | | ||||||||| || ||||| ||||||| |||    
T  31525360 ttagggtggtttttaaggggtttttgttcgagccgttgtttgtgtggcaaccgatttccccttgtttgttttttttccacccaagcttattagtgcttct 31525459  T
Q  138 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||| ||||| |||||||||||| |||||||| |||||||| |||||    
T  31525460 tgcacaggcttgttggttaataatattttgccgattcaaaaaaaaaaa 31525507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 28934861 - 28934724
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttt-tccatccgagcttgttagtgcatcttgcacgggc 146  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  ||||| |||| |||||||| ||||||| ||||||||||||    
T  28934861 tttttaaggggtttttgttcgagccggtgttt-gtggcaaccgatttccccttgttttgttttttctccacccgagcttattagtgcttcttgcacgggc 28934763  T
Q  147 ttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    || |||||||||||| ||||||   |||||||| |||||    
T  28934762 ttgttggttaataatattttgctaattcaaaaaaaaaaa 28934724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 10454279 - 10454422
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgtt-ttgtggcaaccgatttccccttgtgtttatttttt-----ccatccgagcttgttagtgcat 135  Q
    ||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||||| | ||||||||     ||| |||||||| |||||||      
T  10454279 gggtggtttttaaggggtttttgtttgagccggctttcttgtggcaaccgatttccccttgtatgtattttttttttcccacccgagcttattagtgctc 10454378  T
Q  136 cttgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||    
T  10454379 cttgcacgggcttgttggttaataatattttgccatttcaaaaa 10454422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 44656369 - 44656229
Alignment:
Q  33 ttagtgttagggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgt---gtttattttt-tccatccgagcttgtt 128  Q
    ||||| ||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||| |||||||   |||| ||||| |||| |||||||| ||    
T  44656369 ttagttttagggtggtttttaagggatttttgttcgagtctgtgttatatggcaaccgattttcccttgtatggtttttttttctccacccgagcttatt 44656270  T
Q  129 agtgcatcttgcacgggcttcttggttaataattttttgcc 169  Q
     ||||||||||||||||||| |||||||||||| |||||||    
T  44656269 tgtgcatcttgcacgggcttgttggttaataatattttgcc 44656229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 47820897 - 47821022
Alignment:
Q  42 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgcat 135  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| | | ||||||||    ||| |||||||| ||||||| |    
T  47820897 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctttgtatttttttcctccacccgagcttattagtgcgt 47820996  T
Q  136 cttgcacgggcttcttggttaataat 161  Q
    ||||||||||||| ||||||||||||    
T  47820997 cttgcacgggcttgttggttaataat 47821022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 9358883 - 9358743
Alignment:
Q  42 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt-ttattttttccatccgagcttgttagtgcatctt 138  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| | | || |||| |||| || ||||| ||||| | |||     
T  9358883 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctatgtttttttctccacccaagcttattagtacttctc 9358784  T
Q  139 gcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    |||||||||| |||| ||||||| |||||||| ||||||||    
T  9358783 gcacgggcttgttgggtaataatattttgccgattcaaaaa 9358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 52076066 - 52076209
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttt------tccatccgagcttgttagtgcatcttgca 141  Q
    ||||||||||||||||||||||||   |||||| |||||||||||| |||||||| | |||||||      |||| |||||||| ||||||| ||| |||    
T  52076066 tttttaaggggtttttgttcgagcgtttgttttatggcaaccgattaccccttgtttgtattttttttttctccacccgagcttattagtgcttctcgca 52076165  T
Q  142 cgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||||| ||||||| |||| |||||||| |||||||| |||||    
T  52076166 cgggcttgttggttagtaatattttgccgattcaaaaaaaaaaa 52076209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 53349401 - 53349527
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttattttttccatccgagcttgttagtgcatctt 138  Q
    ||||||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||  |||||| |||| ||| || || || ||||||| ||||    
T  53349401 gggtggtttttaaggggtttttgtttgagccggtgtttgtgcggcaaccgattttcccttgtatgtttaattttcccacccaagtttattagtgcttctt 53349500  T
Q  139 gcacgggcttcttggttaataattttt 165  Q
    ||| | |||| ||||||||||||||||    
T  53349501 gcatgagcttgttggttaataattttt 53349527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 20701152 - 20701292
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttt---tccatccgagcttgttagtgcatcttgcacgg 144  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||||||||||||| | |||||||   | || |||||||| ||||||| ||||| ||||    
T  20701152 tttttaaggggtttttgttcgagccgtagttgtgtggcaatcgatttccccttgtttgtatttttttcttcacccgagcttattagtgcttcttgtacgg 20701251  T
Q  145 gcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||  |||||||||||| |||||| | || ||||| |||||    
T  20701252 gctcgttggttaataatattttgctgatttaaaaaaaaaaa 20701292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 28956952 - 28957079
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttcccct--tgtgtttattttttccatccgagcttgttagtgcatcttgcacgg 144  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||  | ||||| |||||  || |||||||| | ||||  ||||||||||    
T  28956952 ttttaaaggggtttttgttcgagccggtgtttgtgtggcaaccgatttccccttctttgtttttttttctcacccgagcttatcagtgtttcttgcacgg 28957051  T
Q  145 gcttcttggttaataattttttgccgtt 172  Q
     ||| |||||||||||| ||||| ||||    
T  28957052 acttgttggttaataatattttgtcgtt 28957079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 42881885 - 42882019
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttg----tgtttattttttccatccgagcttgttagtgcatcttgcacg 143  Q
    ||||||||| ||||||||| |||||||||| ||||||||| |||||||||||||    ||| | ||||||||  |||||||| ||||||||||||| |||    
T  42881885 tttttaaggcgtttttgtttgagccggtgtattgtggcaatcgatttccccttgtatttgtgttttttttcctcccgagctttttagtgcatcttgtacg 42881984  T
Q  144 ggcttcttggttaataattttttgccgtttcaaaaa 179  Q
     |||| |||| ||||||| |||||||| || |||||    
T  42881985 agcttgttgg-taataatattttgccgatttaaaaa 42882019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 46750212 - 46750333
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttc---catccgagcttgttagtgcatctt 138  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| || |||| |||  ||||||   || |||||||| ||||||||||||    
T  46750212 gggtggtttttaaggg-tttttgttcgaaccggtgttttgcggcaaccgattttcctttgtattttctttttctttcacccgagcttattagtgcatctt 46750310  T
Q  139 gcacgggcttcttggttaataat 161  Q
    | || |  || ||||||||||||    
T  46750311 gtacagatttgttggttaataat 46750333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 55166955 - 55166895
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg 101  Q
    |||||||||||||||||||||||||||||||   |||| || |||||||||||||||||||    
T  55166955 gggtggtttttaaggggtttttgttcgagccaaagtttgtgcggcaaccgatttccccttg 55166895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 31833854 - 31834019
Alignment:
Q  1 cgtcattatttttgtgtccggtagttagtgccttagtgttagggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttcccctt 100  Q
    |||||||| ||||||| | ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  31833854 cgtcattacttttgtgactggtagtttgtgccttagtgttggggtggtttttaaggggtttttgttcgagccggtgttatgtggcaaccgattttccctt 31833953  T
Q  101 gtgtttattttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgcc 169  Q
    || |   |||||| || |||||||||||||||||||||||||||  || |||||||||||| |||||||    
T  31833954 gtat---tttttttcacccgagcttgttagtgcatcttgcacggatttgttggttaataatattttgcc 31834019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 12172951 - 12173097
Alignment:
Q  39 ttagggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatct 137  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| | | ||||||||| || ||||| ||||||| |||    
T  12172951 ttagggtggtttttaaggggtttttgttcgagctgatgtttgtgtggcaaccgatttccccttgtttgttttttttccacccaagcttattagtgcttct 12173050  T
Q  138 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 184  Q
    ||||||||||| |||||||||||| |||||||| |||||||| ||||    
T  12173051 tgcacgggcttgttggttaataatattttgccgattcaaaaaaaaaa 12173097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 46757306 - 46757425
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgtt-ttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 140  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||| | ||  ||||||||| | |||||| ||||||||||||||    
T  46757306 gggtggtttttaaagggtttttgttcgagctggtgttattgtggcaatcgatttccccttatattgtttttttccacctgagcttattagtgcatcttgc 46757405  T
Q  141 acgggcttcttggttaataa 160  Q
    |||||||| |||||||||||    
T  46757406 acgggcttgttggttaataa 46757425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 26990601 - 26990739
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 140  Q
    |||||||||||||||| |||||||| ||||||||| || || ||||| |||||| ||||||| | | ||||||||| || ||||| ||||||| ||||||    
T  26990601 gggtggtttttaagggatttttgtttgagccggtgcttgtgcggcaatcgattttcccttgtatgttttttttccacccaagcttattagtgcttcttgc 26990700  T
Q  141 acgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    |||||||| |||||||||||| |||||||| ||||||||    
T  26990701 acgggcttattggttaataatattttgccgattcaaaaa 26990739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 19472797 - 19472944
Alignment:
Q  42 gggtggtttttaagggg-tttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttc--catccgagcttgttagtgcatct 137  Q
    ||||||||||||| ||| |||||||||||||||| |||| | ||||||| ||||||||||| | | |||||||||  || |||||||| ||||||| |||    
T  19472797 gggtggtttttaaagggatttttgttcgagccggagtttgtatggcaactgatttccccttctttgtattttttctccacccgagcttattagtgcgtct 19472896  T
Q  138 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||||||||| |||||||||||| |||||||| |||||||| |||||    
T  19472897 tgcacgggcttgttggttaataatattttgccgattcaaaaaaaaaaa 19472944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 8463097 - 8462958
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttc--catccgagcttgttagtgcatcttgcacgg 144  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||| | |||||||||  || |||||||  ||||||| |||||||||     
T  8463097 tttttaaggggtttttgttcgagccgacgtttttgtggcaaccgattttcccttgtatgtattttttctccacccgagctaattagtgcttcttgcacga 8462998  T
Q  145 gcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||| |||||||||||| |||| || ||||||||| |||||    
T  8462997 gcttgttggttaataatatttt-ccatttcaaaaaaaaaaa 8462958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 42442142 - 42442019
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgt---ttattttttccatccgagcttgttagtgcatct 137  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||| |||| |   || |||||| || |||||||| ||||||| |||    
T  42442142 gggtggtttttaaggggtttttgttcgagtcggtgttttaatggcaaccgatttcccgttgtttgtattttttttttcacccgagcttattagtgcttct 42442043  T
Q  138 tgcacgggcttcttggttaataat 161  Q
    ||||||| ||| ||||||||||||    
T  42442042 tgcacggacttgttggttaataat 42442019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 47028931 - 47029072
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtg-ttttgtggcaaccgatttccccttgtgttta-----ttttttccatccgagcttgttagtgcat 135  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||     ||||||||| |||||||| ||| ||| |    
T  47028931 gggtagtttttaaggggtttttgttcgagccggtgtttttgcggcaaccgatttccccttgtatttatgtttttttttccacccgagcttattaatgcgt 47029030  T
Q  136 cttgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    ||||||||  ||| ||||||  |||| ||| |||||||||||||    
T  47029031 cttgcacgaacttgttggtt--taatatttggccgtttcaaaaa 47029072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 38548673 - 38548821
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttatttttt--ccatccgagcttgttagtgcatc 136  Q
    |||||||||||||||||  ||||||||||||    ||| | ||||||||||||||||||||  ||||| ||||||  ||| |||||||| ||||||| ||    
T  38548673 gggtggtttttaaggggggtttgttcgagccaaattttgtatggcaaccgatttccccttgcttgtttttttttttcccacccgagcttattagtgcgtc 38548772  T
Q  137 ttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||||||| || |||||||||||| |||||||| |||||||| |||||    
T  38548773 ttgcacgggtttgttggttaataatattttgccgattcaaaaaaaaaaa 38548821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 41956016 - 41955891
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgtt-ttgtggcaaccgatttccccttgtgt-----ttattttttccatccgagcttgttagtgcatcttgca 141  Q
    |||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |     || |||| ||||||| ||||| |||||| ||||||||    
T  41956016 tttttaagggatttttgttcgagccggtgttattatggcaaccgatttccccttgtattttagtttttttctccatccaagcttattagtgtatcttgca 41955917  T
Q  142 cgggcttcttggttaataattttttg 167  Q
    ||   || |||||||||||| |||||    
T  41955916 cgaatttgttggttaataatattttg 41955891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 43268739 - 43268645
Alignment:
Q  42 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttcccct--tgtgtttattttttccatccgagcttgttagtg 132  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||  | ||||| |||| |||| |||||||| ||||||    
T  43268739 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctttgttttttttctccacccgagcttattagtg 43268645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 26384960 - 26385100
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt---ttattttttccatccgagcttgttagtgcatct 137  Q
    ||||||||||||||||| ||||||| |||| ||||||| | || ||||||||||||| |||| |   || ||||||||| || ||||| |||| || |||    
T  26384960 gggtggtttttaagggggttttgtttgagctggtgtttgtatgacaaccgatttccctttgtttgtatttttttttccacccaagcttattagcgcttct 26385059  T
Q  138 tgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    || |||||||| | |||||||||| |||| | ||||||||||    
T  26385060 tg-acgggcttgtcggttaataatattttactgtttcaaaaa 26385100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 28447722 - 28447863
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt---ttattttttccatccgagcttgttagtgcatcttgcacg 143  Q
    |||||||| |||||||||||| || | ||||| | | ||||||||||| ||||||| |   || |||||| ||  |||  || ||||||| |||||||||    
T  28447722 tttttaagaggtttttgttcgtgctgatgtttatattgcaaccgattttcccttgtttgtcttttttttttcactcgaatttattagtgcttcttgcacg 28447821  T
Q  144 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||| |||||||||||| |||||||| |||||||| |||||    
T  28447822 ggcttgttggttaataatattttgccgattcaaaaaaaaaaa 28447863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 43460698 - 43460848
Alignment:
Q  43 ggtggttttt-aaggggtttttgttcgagccggtgttttg--tggcaaccgatttccccttgt--gtttattttttc----catccgagcttgttagtgc 133  Q
    |||||||||| |||||||||||||||||| | ||||||||  | ||||||||||||||||| |  |||| |||||||    || |  ||||| |||||||    
T  43460698 ggtggtttttgaaggggtttttgttcgagtcagtgttttgtatcgcaaccgatttccccttcttagttttttttttcttttcaccttagcttattagtgc 43460797  T
Q  134 atcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 184  Q
     ||| |||| | ||| |||||||||||| ||||| || |||||||| ||||    
T  43460798 ttctcgcacagacttgttggttaataatattttgtcgattcaaaaaaaaaa 43460848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 46691981 - 46691839
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgcatc 136  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||    ||| |||||||||||||||| ||    
T  46691981 gggtggtttttaaggggtttttgttcgagccggtgtttatgtggcaaccgatttccccttgtatgtattttttttctccacccgagcttgttagtgcttc 46691882  T
Q  137 ttgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    |||||||||||| |||||||||||| |||||||| ||||||||    
T  46691881 ttgcacgggcttgttggttaataatattttgccgattcaaaaa 46691839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 30655727 - 30655586
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgtg--gcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatcttgcacg 143  Q
    |||||||| |||||||||||||| || | |||||||  ||||||||||||||||||| | ||||||||  ||| |||||||| ||||||| |||||||||    
T  30655727 tttttaagaggtttttgttcgagtcgatattttgtgtggcaaccgatttccccttgtttgtattttttttccacccgagcttattagtgcgtcttgcacg 30655628  T
Q  144 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  30655627 ggcttgttggttaataatattttgccgtttcaaaaaaaaaaa 30655586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 22197675 - 22197816
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttg-----tgtttattttttccatccgagcttgttagtgcatcttgcac 142  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||||||||     ||||| ||||||||| |||||||| |||||||| |||||||    
T  22197675 tttttaaggggtttttgttcgagacggtgttttgtggtaatcgatttccccttgtaatttgttt-ttttttccacccgagctttttagtgcaccttgcac 22197773  T
Q  143 gggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    || ||| |||||||||||| |||| | |||||||||| |||||    
T  22197774 ggacttgttggttaataatattttacagtttcaaaaaaaaaaa 22197816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 22240146 - 22240005
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttg-----tgtttattttttccatccgagcttgttagtgcatcttgcac 142  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||||||||     ||||| ||||||||| |||||||| |||||||| |||||||    
T  22240146 tttttaaggggtttttgttcgagacggtgttttgtggtaatcgatttccccttgtaatttgttt-ttttttccacccgagctttttagtgcaccttgcac 22240048  T
Q  143 gggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    || ||| |||||||||||| |||| | |||||||||| |||||    
T  22240047 ggacttgttggttaataatattttacagtttcaaaaaaaaaaa 22240005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 36615927 - 36615808
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacgggct 147  Q
    ||||||| |||||||||||||||| || |||| |||||||||||||||||||||| ||  ||||||||| |||||||| ||||||| |||||||||||||    
T  36615927 tttttaaagggtttttgttcgagctggagttt-gtggcaaccgatttccccttgttttgtttttttccacccgagcttattagtgcttcttgcacgggct 36615829  T
Q  148 tcttggttaataattttttgc 168  Q
    | |||| ||||||| ||||||    
T  36615828 tgttgggtaataatattttgc 36615808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 184
Target Start/End: Complemental strand, 31424912 - 31424761
Alignment:
Q  39 ttagggtggttttt--aaggggtttttgttcgagccggtgttttg--tggcaaccgatttccccttgt--gtttattttttccatccgagcttgttagtg 132  Q
    ||||||||||||||  |||||||||||| |||||||||||||| |  ||||||||||||||||||| |  |||| |||| |||| || ||||| ||||||    
T  31424912 ttagggtggttttttaaaggggtttttgatcgagccggtgtttcgaatggcaaccgatttccccttctttgttttttttctccacccaagcttattagtg 31424813  T
Q  133 catcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 184  Q
      ||||||||||| || |||||||||||| |||||||| |||||||| ||||    
T  31424812 tttcttgcacgggtttgttggttaataatattttgccgcttcaaaaaaaaaa 31424761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 1039191 - 1039051
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgt--gtttattttttccatccgagcttgttagtgcatcttgcacgg 144  Q
    |||||||||||||||||||||||||   |||| | | ||||||||||| |||||||  |||| |||| |||| |||||||| ||||||| ||||||||||    
T  1039191 tttttaaggggtttttgttcgagccaaagtttgtattgcaaccgattttcccttgtttgttttttttatccacccgagcttattagtgcttcttgcacgg 1039092  T
Q  145 gcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||| | |||||||||| ||||||||||| ||||| |||||    
T  1039091 gcttgtcggttaataatattttgccgtttgaaaaaaaaaaa 1039051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 49035983 - 49035865
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt----ttattttttccatccgagcttgttagtgcatcttgcac 142  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |    || |||| |||| |||||||| ||||||| ||||| ||    
T  49035983 tttttaaggggtttttgttcgaaccggtgtttatgtggcaaccgatttccccttgtttgtaatttttttctccacccgagcttattagtgcttcttgtac 49035884  T
Q  143 gggcttcttggttaataat 161  Q
    || ||| ||||||||||||    
T  49035883 ggacttgttggttaataat 49035865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 41702867 - 41702992
Alignment:
Q  45 tggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttattttttccatccgagcttgttagtgcatcttgca 141  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||  ||||| |||| |||| || | ||| |||||||  ||||||    
T  41702867 tggtttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgacttccccttgtatgttttttttctccacccaaacttattagtgctccttgca 41702966  T
Q  142 cgggcttcttggttaataattttttg 167  Q
    ||||||  |||||| ||||| |||||    
T  41702967 cgggctagttggttgataatattttg 41702992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 33320710 - 33320817
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacgggc 146  Q
    ||||||||||| |||||||||||||||||||| |  ||||||| |||||||||||| |||   ||| ||| |||||||| ||||||| ||||||||||||    
T  33320710 tttttaagggggttttgttcgagccggtgtttgtaaggcaaccaatttccccttgttttt---tttcccacccgagcttattagtgcttcttgcacgggc 33320806  T
Q  147 ttcttggttaa 157  Q
    || ||||||||    
T  33320807 ttgttggttaa 33320817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 32678937 - 32679083
Alignment:
Q  39 ttagggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttc-----catccgagcttgttagtg 132  Q
    |||| |||||||||||||||||||||||| |||| || |||| | ||||| ||||||  |||||| ||| ||||||      ||  ||||||| ||||||    
T  32678937 ttagagtggtttttaaggggtttttgttccagccagtattttagcggcaatcgatttttccttgtattttttttttttttttcactcgagcttattagtg 32679036  T
Q  133 catcttgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    | |||||||||||||| |||||||||||  ||| ||||||| |||||    
T  32679037 cgtcttgcacgggcttgttggttaataaaatttagccgtttaaaaaa 32679083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 42598053 - 42598130
Alignment:
Q  108 ttttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||| |||| || ||||| ||||||| ||||||||||| || |||||||||||| ||||||||||| ||||| |||||    
T  42598053 ttttctccacccaagcttattagtgcttcttgcacgggtttgttggttaataatattttgccgttttaaaaaaaaaaa 42598130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 43397640 - 43397781
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttg------tgtttattttttccatccgagcttgttagtgcat 135  Q
    ||||||||||| | |||||||||||||||| | |||||||||||||| ||||| || |||      | ||| |||||| || || ||||| ||||||| |    
T  43397640 gggtggttttttaagggtttttgttcgagcagttgttttgtggcaacagattttcctttgtatgtttttttttttttttcacccaagctt-ttagtgctt 43397738  T
Q  136 cttgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    |||||||||| || ||||||||||| | ||||||| ||||||||    
T  43397739 cttgcacgggtttattggttaataa-tatttgccgattcaaaaa 43397781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 38908663 - 38908800
Alignment:
Q  36 gtgttagggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgttta-ttttttccatccgagcttgttagtgca 134  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||| |||||| || |||||||| ||||||||    
T  38908663 gtgttggggtggtttttaaggggtttttgttcgaaccggtgttttgtggctaccgattttcccttgtatttattttttttcacccgagcttattagtgca 38908762  T
Q  135 tcttgcacgggcttcttggttaataattttttgccgtt 172  Q
    |||||||||| ||| |||||||||||| ||||||||||    
T  38908763 tcttgcacggccttattggttaataatattttgccgtt 38908800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 41419617 - 41419748
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgtt-ttgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcatct 137  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| ||| ||||||   ||| |||||||| |||||||||||    
T  41419617 gggtggtttttaaggggtttttgttcgagtcggtgttattatggcaaccgatttccccttgtatttgtttttttttccacccgagcttattagtgcatct 41419716  T
Q  138 tgcacgggcttcttggttaataattttttgcc 169  Q
    ||||||||||| |||||||||||| |||||||    
T  41419717 tgcacgggcttgttggttaataatattttgcc 41419748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 14732473 - 14732334
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttcc-atccgagcttgttagtgcatcttg 139  Q
    |||||||||||||||||||||||||||||| ||| |||| | || ||||||||||||||||| ||  |||||||| | |||||||| |||||||| || |    
T  14732473 gggtggtttttaaggggtttttgttcgagctggtatttttgcggtaaccgatttccccttgtattatttttttcccacccgagcttattagtgcacctcg 14732374  T
Q  140 cacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    ||||||||| |||||||||||| ||||||| |||||||||    
T  14732373 cacgggcttgttggttaataatattttgccttttcaaaaa 14732334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 41378332 - 41378216
Alignment:
Q  42 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttg 139  Q
    ||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||| |||    |||||||| |||||||| ||||||||||||     
T  41378332 gggtggtttttaaaggggtttttattcgagccggagtttgtgtggcaaccgatttcccctt-tgt---atttttccacccgagcttattagtgcatcttt 41378237  T
Q  140 cacgggcttcttggttaataa 160  Q
    ||||||||| |||||||||||    
T  41378236 cacgggcttgttggttaataa 41378216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 22649193 - 22649053
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttg--tggcaaccgatttccccttgtgtttattttt-tccatccgagcttgttagtgcatcttgcacgg 144  Q
    |||| |||||||||||| || ||||||||||| |  ||||||||||||||||||| | | | ||||| || | || ||||| ||||| | ||||||||||    
T  22649193 ttttaaaggggtttttgatcaagccggtgtttggaatggcaaccgatttccccttctttgtttttttctctacccaagcttattagtacttcttgcacgg 22649094  T
Q  145 gcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||| |||||||||||  |||||||| |||||||| |||||    
T  22649093 gcttgttggttaataaaattttgccgcttcaaaaaaaaaaa 22649053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 43356750 - 43356803
Alignment:
Q  108 ttttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataat 161  Q
    |||||| || |||| ||| |||||||||||||||||| ||| ||||||||||||    
T  43356750 tttttttcacccgaacttattagtgcatcttgcacggacttattggttaataat 43356803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 40930961 - 40930818
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttatttttt-ccatccgagcttgttagtgcatcttgc 140  Q
    ||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||| | |||||||| ||| |||||||| ||||||| ||||||    
T  40930961 gggtggtttttaaggagtttttgttcgagccgttgttt-gtgacaaccgatttccccttgtttgtatttttttccacccgagcttattagtgcttcttgc 40930863  T
Q  141 acgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||||||| |||||||||||| ||||||| ||||||||| |||||    
T  40930862 acgggcttgttggttaataatattttgccatttcaaaaaaaaaaa 40930818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 13959347 - 13959207
Alignment:
Q  49 ttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcatcttgcacgg 144  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| || |||| | ||||||||   ||| |||||||| ||| ||| ||||||||||    
T  13959347 ttttaaggggtttttgtttgagccggtgtttatgtggcaaccgattttcctttgtttgtatttttttttccacccgagcttattattgcttcttgcacgg 13959248  T
Q  145 gcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||| |||| ||||||| ||||||||||||||||| |||||    
T  13959247 gcttgttggctaataatattttgccgtttcaaaaaaaaaaa 13959207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 24200753 - 24200614
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 140  Q
    |||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||| | | ||||||||| || ||||| ||||||| ||||||    
T  24200753 gggtggtttttaagtg-tttttgttcgagccggtgtttttgcggcaaccgatttccccttgtatgttttttttccacccaagcttattagtgcttcttgc 24200655  T
Q  141 acgggcttcttggttaataattttttgccgtttcaaaaata 181  Q
    |||| ||| ||| |||||||| |||||||| || |||||||    
T  24200654 acggacttgttgattaataatattttgccgattaaaaaata 24200614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 25829399 - 25829259
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcatct 137  Q
    |||||||||||||||||||||| ||| ||||||||||| |  || ||||||||||||||||| | ||||||||   ||| |||||||| ||||||| |||    
T  25829399 gggtggtttttaaggggtttttattcaagccggtgtttatagggaaaccgatttccccttgtttgtatttttttttccacccgagcttattagtgcttct 25829300  T
Q  138 tgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    ||||||||||| ||||||||||| | ||||||| ||||||||    
T  25829299 tgcacgggcttgttggttaataa-tatttgccgattcaaaaa 25829259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 5200615 - 5200469
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt-ttattttttccatccgagcttgttagtgcatcttg 139  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||| | || |||| |||| || | ||| ||||||  |||||    
T  5200615 gggtgatttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgattttcccttgtatgtttttttctccacccaaacttattagtgtttcttg 5200516  T
Q  140 cacgggcttcttggttaataattttttgccgtttcaaaaataaaaag 186  Q
    ||||| ||| |||||||||||| |||||||| || ||||| ||||||    
T  5200515 cacggacttgttggttaataatattttgccgattaaaaaaaaaaaag 5200469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 22839250 - 22839391
Alignment:
Q  42 gggtggtttttaagggg-tttttgttcgagccggtgttttgt--ggcaaccgatttccccttgtgtttattttt--tccatccgagcttgttagtgcatc 136  Q
    ||||||||||||| ||| ||||||||||||||| |||||| |  |||||||||||||| ||| | | | |||||  ||||||||| ||| ||||||| ||    
T  22839250 gggtggtttttaaagggatttttgttcgagccgatgttttatatggcaaccgatttcctcttctttgtttttttcctccatccgaacttattagtgcgtc 22839349  T
Q  137 ttgcacgggcttcttggttaataattttttgccgtttcaaaa 178  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  22839350 ttgcacgggcttgttggttaataatattttgccgattcaaaa 22839391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 38086551 - 38086402
Alignment:
Q  42 gggtggttttt--aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcat 135  Q
    |||||||||||  |||||||||||||||||||| | |||| | ||||||||||||| ||||| | | ||||||||   ||| |||||||| ||||||| |    
T  38086551 gggtggttttttaaaggggtttttgttcgagccagagtttgtatggcaaccgattttcccttctttgtatttttttctccacccgagcttattagtgcgt 38086452  T
Q  136 cttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||||||||||| |||||||||||| |||||| | ||| |||| |||||    
T  38086451 cttgcacgggcttattggttaataatattttgctgattctaaaaaaaaaa 38086402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 10124866 - 10124935
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgt--ggcaaccgatttccccttgtgtttattttttcc 115  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | | ||||||||    
T  10124866 tttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttccccttgtttgttttttttcc 10124935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 30836272 - 30836116
Alignment:
Q  42 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttt-------tccatccgagctt----gtt 128  Q
    ||||||||||||| ||||||||||||||||||||| ||| || ||||| |||||||||||| | ||| |||||       |||||||||||||     ||    
T  30836272 gggtggtttttaaaggggtttttgttcgagccggtatttgtgcggcaatcgatttccccttctttttttttttttttttctccatccgagcttattaatt 30836173  T
Q  129 agtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||| ||| ||||| |||| |||||||||||| |||||||| |||||||| |||||    
T  30836172 agtgcttctcgcacgagcttgttggttaataatattttgccgattcaaaaaaaaaaa 30836116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 7845135 - 7845184
Alignment:
Q  136 cttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| |||||    
T  7845135 cttgcacgggcttgttggttaataatattttgccgtttcaaaaaaaaaaa 7845184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 44362994 - 44362918
Alignment:
Q  108 ttttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 184  Q
    |||||||||||||| ||| ||||||| |||||||| || || ||||||||||||  ||| |||||||||||| ||||    
T  44362994 ttttttccatccgaacttattagtgcttcttgcacaggattgttggttaataataattttccgtttcaaaaaaaaaa 44362918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 584187 - 584123
Alignment:
Q  121 agcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||| ||||||| ||||| |||||||| |||| ||||||| |||||||||||||| || |||||    
T  584187 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgtttcaacaaaaaaaa 584123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 7845080 - 7845138
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg 101  Q
    ||||||||||||||||| ||  |||||||||||||||  ||| ||||||||||||||||||    
T  7845080 gggtggtttttaaggggatt--gttcgagccggtgttaatgttgcaaccgatttccccttg 7845138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 16572074 - 16572198
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatcttgcacgg 144  Q
    ||||||| ||| |||||||||| |||||||||| | |||||||||||||||||||| ||||||||||  ||| |||||||| ||||||||||| ||||||    
T  16572074 tttttaaaggggttttgttcgaaccggtgtttttgcggcaaccgatttccccttgtatttattttttttccacccgagcttattagtgcatctcgcacgg 16572173  T
Q  145 gcttcttggttaataattttttgcc 169  Q
    |||| |||||||||||| |||||||    
T  16572174 gcttgttggttaataatattttgcc 16572198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 47571694 - 47571560
Alignment:
Q  50 tttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttc-catccgagcttgttagtgcatcttgcacgggctt 148  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||| ||||||| ||||||||||  || |||||||| |||||||  ||| |||||| ||    
T  47571694 tttaaggggtttttgtttgagccggtgttt-gtggcaaccaattttcccttgtatttattttttttcacccgagcttattagtgctccttccacgggttt 47571596  T
Q  149 cttggttaataattttttgccgtttcaaaaataaaa 184  Q
     |||||||||||| |||||||| |||||||| ||||    
T  47571595 gttggttaataatattttgccgattcaaaaaaaaaa 47571560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 32183275 - 32183425
Alignment:
Q  42 gggtggttttt--aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttcccct--tgtgtttatttt-ttccatccgagcttgttagtgcat 135  Q
    |||||||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||  | ||||| |||| ||||| |||||||| |||||||      
T  32183275 gggtggttttttaaaggggtttttgttcgagccggtgtttgtatggcaaccgatttccccttctttgttttttttcttccacccgagcttattagtgcgc 32183374  T
Q  136 cttgcacgggctt-cttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||||||||||||  |||||||||||| |||||||| || ||||| |||||    
T  32183375 cttgcacgggcttgtttggttaataatattttgccgatttaaaaaaaaaaa 32183425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 15187072 - 15186975
Alignment:
Q  83 ggcaaccgatttccccttgtgtttattttt-tccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    |||||||||||||||||||| ||  ||||| |||| || ||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  15187072 ggcaaccgatttccccttgtattcttttttatccacccaagcttattagtgcatcttgcacgggcttgttggttaataatattttgccgattcaaaaa 15186975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 55133233 - 55133102
Alignment:
Q  45 tggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacg 143  Q
    |||||||||| |||||||||||||||| | ||||| |||||||| | ||||||| |||| | | || ||| |||||||| || ||||||| |||||||||    
T  55133233 tggtttttaaagggtttttgttcgagctgatgtttgtgtggcaatcaatttccc-ttgtttgttttcttttcatccgagtttattagtgcttcttgcacg 55133135  T
Q  144 ggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    |||||   |||||||||| ||||| |||||||||||    
T  55133134 ggctt---ggttaataatattttgtcgtttcaaaaa 55133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 25641407 - 25641263
Alignment:
Q  42 gggtggttttt--aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgca 134  Q
    |||||||||||  || |||||||||||||||||| ||||  | |||||||| |||||||||| | | ||||||||    ||| || ||||| |||||||     
T  25641407 gggtggttttttaaaagggtttttgttcgagccgatgttagtatggcaaccaatttccccttctttgtattttttttctccacccaagctttttagtgct 25641308  T
Q  135 tcttgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||    
T  25641307 tcttgcacgggcttgttggttaataacattttgccgattcaaaaa 25641263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 16662441 - 16662301
Alignment:
Q  41 agggtggtttttaa-ggggtttttgttcgagccggtgttttgt--ggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatct 137  Q
    |||||||||||||| ||||||||||| |||||| |||||||||  |||||| ||||| ||||| |   | ||||||||| |  ||||| ||||||| |||    
T  16662441 agggtggtttttaaaggggtttttgtacgagccagtgttttgtatggcaacagattttcccttcttagt-ttttttccaccttagcttattagtgcttct 16662343  T
Q  138 tgcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
     |||||||||| |||||||||||| |||||| | ||||||||    
T  16662342 cgcacgggcttgttggttaataatattttgctgattcaaaaa 16662301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 42390906 - 42390766
Alignment:
Q  43 ggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttt---tccatccgagcttgttagtgcatctt 138  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||||||   |||| | ||| |||||   |||| |||||||| ||||| | ||||    
T  42390906 ggtggtttttaaggggtttttgtttgagccggtgttttagcggcaaccgattgttccttttatttgtttttttctccacccgagcttattagtacgtctt 42390807  T
Q  139 gcacgggcttcttggttaataattttttgccgtttcaaaaa 179  Q
    |||||||||| ||||  |||||  ||| |||| ||||||||    
T  42390806 gcacgggcttgttggaaaataaaatttagccgattcaaaaa 42390766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 5341706 - 5341765
Alignment:
Q  185 agctcctataaatatatcaacccttacactcactctcacatcaccaacaccacttcctct 244  Q
    |||||||||||||| |  |||||| | |||||||||||||||||||||| ||||||||||    
T  5341706 agctcctataaataaacaaaccctcagactcactctcacatcaccaacatcacttcctct 5341765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 25222218 - 25222277
Alignment:
Q  185 agctcctataaatatatcaacccttacactcactctcacatcaccaacaccacttcctct 244  Q
    |||||||||||||| || |||| ||| |||||||||||||||||||||| ||||| ||||    
T  25222218 agctcctataaataaataaacctttatactcactctcacatcaccaacatcactttctct 25222277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 45511440 - 45511390
Alignment:
Q  135 tcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||||||||||||| |||||||||||| |||||| | |||||||| |||||    
T  45511440 tcttgcacgggcttgttggttaataatattttgctgattcaaaaaaaaaaa 45511390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 23173107 - 23172985
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatctt 138  Q
    ||||||||||||||||| |||||||||||||||||||| |  |||||| |||||| |||||| | ||||||||  ||| |||||||| ||||||| ||||    
T  23173107 gggtggtttttaagggggttttgttcgagccggtgtttatagggcaactgatttctccttgtttgtattttttttccacccgagcttattagtgcttctt 23173008  T
Q  139 gcacgggcttcttggttaataat 161  Q
    |||||||||| ||||||||||||    
T  23173007 gcacgggcttgttggttaataat 23172985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 22887211 - 22887337
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttatttt-ttccatccgagcttgttagtgcatcttgc 140  Q
    ||||||||||||||||||||||||| || || || |||||||||||| ||||| ||||| | ||| |||| | ||| |||||||| ||||||||||| ||    
T  22887211 gggtggtttttaaggggtttttgtttgaacctgtcttttgtggcaactgattttcccttatattttttttctcccacccgagcttattagtgcatctcgc 22887310  T
Q  141 acgggcttcttggttaataattttttg 167  Q
    |||||||| |||||||||||| |||||    
T  22887311 acgggcttgttggttaataatattttg 22887337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 9931935 - 9931785
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt-------ccatccgagcttgttagtgc 133  Q
    ||||||||||| ||| |||||||||||||| ||||||| || ||||||||||||||||| || | ||||||||       ||| || |||||||||||||    
T  9931935 gggtggtttttgaggtgtttttgttcgagctggtgtttgtgcggcaaccgatttcccctcgtttgtatttttttttcttcccacccaagcttgttagtgc 9931836  T
Q  134 atcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
     |||||||||||||| ||||||||||| | ||| |||||||||||| |||||    
T  9931835 ttcttgcacgggcttgttggttaataa-tatttaccgtttcaaaaaaaaaaa 9931785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 25539810 - 25539947
Alignment:
Q  33 ttagtgttagggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtt----tattttttccatccgagcttgtt 128  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||  ||||||||||||||| ||||| ||    | |||||| || |||||||| ||    
T  25539810 ttagttttggggtggtttttaaggggtttttgttcgagccgatgtttgatggcaaccgatttcctcttgtatttttgtttttttttcacccgagcttatt 25539909  T
Q  129 agtgcatcttgcacgggcttcttggttaataattttttg 167  Q
    | ||| |||||||||||||| |||| ||||||| |||||    
T  25539910 aatgcttcttgcacgggcttgttgg-taataatattttg 25539947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 10431063 - 10431204
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgt--gtttattttt-tccatccgagcttgttagtgcatcttgcacg 143  Q
    |||||| | |||||||||||||| |||||||| |||||||||||||||| ||||||  |||| ||||| |||| |||| ||| ||| ||| |||||||||    
T  10431063 tttttatgaggtttttgttcgagtcggtgtttgtgtggcaaccgatttctccttgtttgtttttttttctccacccgaacttattaatgcttcttgcacg 10431162  T
Q  144 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    || || ||| |||||||| |||| |||||||||||| |||||    
T  10431163 ggtttgttgattaataatatttttccgtttcaaaaaaaaaaa 10431204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 819254 - 819134
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtt-tattttttccatccgagcttgttagtgcatcttgcacgggc 146  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||| |||| || | ||||||||| |||| ||| ||||||| |||| ||||| |    
T  819254 tttttaaggggtttttgttcgagttggtg-tttgtggcaaccgatttccctttgttttattttttttccacccgaacttattagtgcttcttacacggac 819156  T
Q  147 ttcttggttaataattttttgc 168  Q
    || |||| ||||||| ||||||    
T  819155 ttattgggtaataatattttgc 819134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 3677924 - 3677779
Alignment:
Q  42 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtt----tattttttccatccgagcttgttagtgcatct 137  Q
    ||||||||||||||||||||||||| ||||| |||| ||| |||||||||||  ||||||| ||    | ||||||||| |||||||| |||||||||||    
T  3677924 gggtggtttttaaggggtttttgtttgagccagtgtattgcggcaaccgattgtcccttgtattcttgttttttttccacccgagcttattagtgcatct 3677825  T
Q  138 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 184  Q
     ||| |||||| |||| ||||||| | |||| | |||||||| ||||    
T  3677824 cgcatgggcttgttgg-taataatatattgctgattcaaaaaaaaaa 3677779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 42241708 - 42241577
Alignment:
Q  57 ggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttcc--atccgagcttgttagtgcatcttgcacgggcttcttgg 153  Q
    ||||||||||| |||||| |||| | |||| |||||||||||||| | | |||||||| |  |||||||||| |||||||||||||| ||| ||| ||||    
T  42241708 ggtttttgttcaagccggagtttgtatggcgaccgatttccccttctttgtatttttttctcatccgagcttattagtgcatcttgcccggacttattgg 42241609  T
Q  154 ttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||||||| |||||||| || ||||| |||||    
T  42241608 ttaataatattttgccgattaaaaaaaaaaaa 42241577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 2292168 - 2292222
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttttgt--ggcaaccgatttcccctt 100  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  2292168 tttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttcccctt 2292222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 9597800 - 9597742
Alignment:
Q  127 ttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||||| |||||||| ||||| |||||||||||| |||||||| |||||||| |||||    
T  9597800 ttagtgcttcttgcacaggcttgttggttaataatattttgccgattcaaaaaaaaaaa 9597742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 33112844 - 33112703
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttattttttccatccga-gcttgttagtgcatcttgcacg 143  Q
    |||||||||||||||||||||||||   |||| | ||||||||||||||||||||  ||||| ||||||||  || | |||| ||||||| |||||||||    
T  33112844 tttttaaggggtttttgttcgagccaaagtttgtatggcaaccgatttccccttgcttgttttttttttcccccccaagctttttagtgcgtcttgcacg 33112745  T
Q  144 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||| |||||||||||| |||||||| |||||||| |||||    
T  33112744 ggcttgttggttaataatattttgccgattcaaaaaaaaaaa 33112703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 10246910 - 10247049
Alignment:
Q  42 gggtggtttttaa-ggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 140  Q
    ||||||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||| | | | |||| |||| | || | | ||||||| ||||||    
T  10246910 gggtggtttttaaaggggtttttgttcgagccggtgttgtgtgacaaccgattttcccttctttgttttttctccacctgaaccttttagtgcttcttgc 10247009  T
Q  141 acgggcttcttggttaataat-tttttgccgtttcaaaaa 179  Q
    |||||||| |||||||||||| ||||||||| || |||||    
T  10247010 acgggcttgttggttaataatatttttgccgattaaaaaa 10247049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 11546772 - 11546912
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttc-catccgagcttgttagtgcatcttgcacggg 145  Q
    ||||||||| |||||||||||||||||||||| | || ||||||||||| |||| | | | ||||||| || |||||||| |||||||  ||||||||||    
T  11546772 tttttaaggagtttttgttcgagccggtgtttgtatgacaaccgatttctccttctttgttttttttctcacccgagcttattagtgctacttgcacggg 11546871  T
Q  146 cttcttggttaataattttttgccgtttcaaaaataaaaag 186  Q
    ||| |  ||||||||| ||||||||||| ||||| ||||||    
T  11546872 cttgtcagttaataatattttgccgtttaaaaaaaaaaaag 11546912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 6575720 - 6575860
Alignment:
Q  41 agggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgcat 135  Q
    ||||||||||||||| ||||||||||||||||| ||||| | || |||| ||||| || |||||| ||||||||    ||| |||| ||| ||||||| |    
T  6575720 agggtggtttttaagaggtttttgttcgagccgatgtttgtatgacaactgattttcctttgtgtgtatttttttcttccacccgaacttattagtgctt 6575819  T
Q  136 cttgcacgggcttcttggttaataattttttgccgtttcaa 176  Q
    ||||||||||||| ||| |||||||| |||||||| |||||    
T  6575820 cttgcacgggcttgttgattaataatattttgccgattcaa 6575860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 15859093 - 15859244
Alignment:
Q  42 gggtggttttt--aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttcccc----ttgtgtttattttttccatccgagcttgttagtgca 134  Q
    |||||||||||  ||||||||||||||||||||||||||| | |||||||||||||||||    |||| ||| |||| |||| |||||||| |||||||     
T  15859093 gggtggttttttaaaggggtttttgttcgagccggtgtttgtttggcaaccgatttccccttctttgttttttttttctccacccgagcttattagtgcg 15859192  T
Q  135 tcttgcacgggct--tcttggttaataattttttgccgtttcaaaaataaaa 184  Q
     ||||||||||||  | ||| |||||||| |||||||| ||| |||| ||||    
T  15859193 ccttgcacgggcttgttttgattaataatattttgccgattctaaaaaaaaa 15859244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 34761167 - 34761306
Alignment:
Q  48 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatcttgcacgg 144  Q
    ||||||||| ||||||||||||| |||||||| | || |||||||||||  ||| | | ||||||||  ||| |||||||| |||||||  |||||||||    
T  34761167 tttttaaggagtttttgttcgagtcggtgtttgtatgacaaccgatttcttcttctttgtatttttttcccacccgagcttattagtgctacttgcacgg 34761266  T
Q  145 gcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    |||| | | ||||||| | |||||||||||||||| |||||    
T  34761267 gcttgtcgtttaataa-tatttgccgtttcaaaaaaaaaaa 34761306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 33984753 - 33984814
Alignment:
Q  42 gggtggttttt-aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg 101  Q
    ||||||||||| ||||||||||||||||| || |||||| | ||||||||||||||||||||    
T  33984753 gggtggtttttgaaggggtttttgttcgaaccagtgtttgtatggcaaccgatttccccttg 33984814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 12754465 - 12754422
Alignment:
Q  127 ttagtgcatcttgcacgggcttcttggttaataattttttgccg 170  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  12754465 ttagtgcgtcttgcacgggtttgttggttaataattttttgccg 12754422  T

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Target: scaffold0209 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 12947 - 12883
Alignment:
Q  121 agcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 185  Q
    ||||| ||||||| ||||| |||||||| |||| ||||||| |||||||||||||| || |||||    
T  12947 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgtttcaacaaaaaaaa 12883  T

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Target: scaffold0343 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 7956 - 8012
Alignment:
Q  127 ttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaa 183  Q
    ||||||||| |||||  ||||| |||||||||||| |||||||| || |||||||||    
T  7956 ttagtgcattttgcataggcttgttggttaataatattttgccgatttaaaaataaa 8012  T

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