View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11250_low_12 (Length: 240)

Name: NF11250_low_12
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11250_low_12
NF11250_low_12
[»] chr1 (27 HSPs)
chr1 (1-223)||(37841758-37841980)
chr1 (4-95)||(48064197-48064288)
chr1 (1-107)||(9507088-9507194)
chr1 (1-90)||(4549759-4549848)
chr1 (1-88)||(31517828-31517912)
chr1 (1-88)||(38578423-38578509)
chr1 (2-111)||(37593758-37593868)
chr1 (3-95)||(10744196-10744288)
chr1 (2-70)||(8852773-8852841)
chr1 (48-105)||(27820475-27820532)
chr1 (1-93)||(4445595-4445690)
chr1 (6-71)||(23895249-23895313)
chr1 (50-105)||(35058893-35058949)
chr1 (32-84)||(38247342-38247394)
chr1 (4-106)||(42169633-42169734)
chr1 (4-52)||(45999379-45999427)
chr1 (1-84)||(9572196-9572279)
chr1 (1-84)||(27146336-27146419)
chr1 (1-88)||(46252770-46252857)
chr1 (2-52)||(4700155-4700205)
chr1 (2-84)||(7137090-7137172)
chr1 (3-41)||(44236621-44236659)
chr1 (1-63)||(49557062-49557123)
chr1 (4-42)||(50319233-50319271)
chr1 (1-42)||(172665-172706)
chr1 (1-61)||(4256130-4256190)
chr1 (57-97)||(10199536-10199576)
[»] chr4 (31 HSPs)
chr4 (1-95)||(17883956-17884050)
chr4 (1-95)||(42641721-42641815)
chr4 (1-106)||(26520317-26520423)
chr4 (1-95)||(2987077-2987171)
chr4 (1-90)||(2733213-2733302)
chr4 (12-95)||(30066865-30066948)
chr4 (5-100)||(45516640-45516735)
chr4 (1-95)||(3155492-3155585)
chr4 (1-95)||(26883883-26883977)
chr4 (4-61)||(6364071-6364128)
chr4 (4-73)||(44319861-44319928)
chr4 (34-95)||(50298419-50298480)
chr4 (1-68)||(23503474-23503541)
chr4 (22-100)||(17751231-17751309)
chr4 (1-106)||(19039657-19039763)
chr4 (29-95)||(44863078-44863143)
chr4 (1-42)||(7601700-7601741)
chr4 (47-95)||(10206033-10206081)
chr4 (6-73)||(24443949-24444015)
chr4 (1-84)||(44138458-44138541)
chr4 (1-95)||(11389415-11389508)
chr4 (4-42)||(51044550-51044588)
chr4 (44-89)||(18782896-18782941)
chr4 (4-41)||(22684607-22684644)
chr4 (1-42)||(24160931-24160972)
chr4 (4-73)||(47970229-47970297)
chr4 (4-69)||(51555958-51556022)
chr4 (11-79)||(21731751-21731819)
chr4 (4-52)||(30024631-30024679)
chr4 (1-61)||(44249208-44249268)
chr4 (49-85)||(46401158-46401194)
[»] chr2 (30 HSPs)
chr2 (6-95)||(9833043-9833132)
chr2 (3-105)||(30990459-30990562)
chr2 (1-95)||(39567791-39567885)
chr2 (35-95)||(26626765-26626824)
chr2 (21-89)||(32364832-32364900)
chr2 (3-105)||(26143731-26143832)
chr2 (1-73)||(36114611-36114685)
chr2 (44-93)||(41170419-41170467)
chr2 (1-61)||(4026739-4026799)
chr2 (4-72)||(38239642-38239709)
chr2 (48-107)||(41702320-41702380)
chr2 (5-84)||(9395029-9395108)
chr2 (29-84)||(19608741-19608796)
chr2 (32-83)||(41407191-41407242)
chr2 (54-97)||(44438980-44439023)
chr2 (1-73)||(44600449-44600523)
chr2 (5-73)||(5133685-5133750)
chr2 (4-66)||(17952792-17952853)
chr2 (4-93)||(10198569-10198657)
chr2 (18-106)||(15288711-15288800)
chr2 (8-61)||(29628837-29628890)
chr2 (48-97)||(43570303-43570351)
chr2 (7-84)||(44589934-44590011)
chr2 (1-57)||(3611152-3611208)
chr2 (48-103)||(12313307-12313363)
chr2 (4-52)||(25609727-25609775)
chr2 (53-104)||(41880642-41880694)
chr2 (1-73)||(42457858-42457930)
chr2 (32-84)||(42659280-42659332)
chr2 (1-95)||(43199300-43199396)
[»] chr8 (27 HSPs)
chr8 (1-84)||(37444503-37444586)
chr8 (3-95)||(41442525-41442617)
chr8 (2-73)||(16210975-16211046)
chr8 (1-95)||(26215385-26215478)
chr8 (29-95)||(2840247-2840313)
chr8 (29-95)||(2844934-2845000)
chr8 (29-95)||(43730665-43730731)
chr8 (5-69)||(3936763-3936827)
chr8 (3-95)||(9956902-9956993)
chr8 (4-52)||(42597332-42597380)
chr8 (4-73)||(28769430-28769498)
chr8 (7-79)||(10114394-10114466)
chr8 (29-88)||(2833446-2833505)
chr8 (10-73)||(8216790-8216853)
chr8 (32-95)||(14956424-14956486)
chr8 (48-95)||(31916469-31916516)
chr8 (6-69)||(31916529-31916592)
chr8 (1-44)||(32976356-32976399)
chr8 (6-73)||(35869748-35869814)
chr8 (50-107)||(40015018-40015076)
chr8 (1-42)||(4558739-4558780)
chr8 (1-94)||(12972746-12972838)
chr8 (4-61)||(14482125-14482181)
chr8 (64-97)||(44426538-44426571)
chr8 (28-84)||(10120656-10120712)
chr8 (59-106)||(31751702-31751750)
chr8 (1-73)||(35453711-35453782)
[»] chr7 (32 HSPs)
chr7 (1-103)||(43250767-43250870)
chr7 (29-95)||(7612347-7612413)
chr7 (4-95)||(42656403-42656494)
chr7 (4-59)||(28178893-28178948)
chr7 (22-86)||(21619304-21619368)
chr7 (28-106)||(32410410-32410490)
chr7 (49-107)||(35331019-35331078)
chr7 (4-42)||(5006600-5006638)
chr7 (1-95)||(40009359-40009452)
chr7 (1-107)||(40687615-40687721)
chr7 (18-84)||(47795856-47795922)
chr7 (22-95)||(33552930-33553002)
chr7 (29-105)||(46139820-46139896)
chr7 (58-94)||(30535468-30535504)
chr7 (1-41)||(43152990-43153030)
chr7 (32-83)||(21568757-21568808)
chr7 (32-83)||(45806606-45806657)
chr7 (29-95)||(40598475-40598541)
chr7 (3-44)||(2894756-2894797)
chr7 (4-61)||(5373148-5373204)
chr7 (1-42)||(8960715-8960756)
chr7 (20-73)||(32156734-32156787)
chr7 (54-106)||(32791891-32791944)
chr7 (7-84)||(33672977-33673054)
chr7 (1-42)||(34441030-34441071)
chr7 (56-104)||(34672892-34672941)
chr7 (4-61)||(49060463-49060519)
chr7 (1-73)||(20881724-20881796)
chr7 (57-104)||(31002946-31002994)
chr7 (55-95)||(32156897-32156937)
chr7 (7-51)||(33894555-33894599)
chr7 (57-105)||(39907698-39907745)
[»] chr3 (24 HSPs)
chr3 (1-95)||(35127459-35127553)
chr3 (1-104)||(30574002-30574104)
chr3 (1-90)||(49465751-49465840)
chr3 (29-84)||(47249584-47249639)
chr3 (19-88)||(20669076-20669143)
chr3 (1-42)||(2128339-2128380)
chr3 (4-68)||(22232742-22232805)
chr3 (23-94)||(402651-402721)
chr3 (32-83)||(29520607-29520658)
chr3 (4-42)||(1395612-1395650)
chr3 (29-95)||(40665317-40665383)
chr3 (4-74)||(44284149-44284218)
chr3 (1-38)||(15304435-15304472)
chr3 (4-49)||(40122843-40122888)
chr3 (4-61)||(41028942-41028998)
chr3 (1-42)||(42809242-42809283)
chr3 (4-40)||(905061-905097)
chr3 (8-88)||(2304336-2304416)
chr3 (47-91)||(5435724-5435768)
chr3 (11-95)||(28240215-28240298)
chr3 (1-61)||(34235164-34235224)
chr3 (4-107)||(34958204-34958307)
chr3 (2-42)||(36445673-36445713)
chr3 (4-52)||(41159040-41159088)
[»] chr5 (37 HSPs)
chr5 (1-105)||(6593177-6593282)
chr5 (3-103)||(28776855-28776955)
chr5 (1-108)||(14674989-14675096)
chr5 (18-104)||(42573884-42573971)
chr5 (1-95)||(5963370-5963464)
chr5 (18-92)||(10771983-10772057)
chr5 (1-100)||(465838-465936)
chr5 (1-106)||(9202836-9202941)
chr5 (18-107)||(41059595-41059685)
chr5 (4-73)||(20982226-20982294)
chr5 (6-95)||(26516187-26516275)
chr5 (49-103)||(30291140-30291195)
chr5 (4-73)||(6738498-6738566)
chr5 (23-84)||(39105363-39105424)
chr5 (1-73)||(1465107-1465179)
chr5 (32-84)||(24030531-24030583)
chr5 (1-97)||(41819498-41819594)
chr5 (36-95)||(2568539-2568598)
chr5 (1-60)||(7674571-7674630)
chr5 (48-95)||(32372503-32372549)
chr5 (18-88)||(1618987-1619057)
chr5 (29-95)||(6944873-6944939)
chr5 (4-42)||(7096218-7096256)
chr5 (1-95)||(8334466-8334560)
chr5 (1-95)||(11835165-11835259)
chr5 (4-42)||(12407752-12407790)
chr5 (1-87)||(42582808-42582894)
chr5 (2-71)||(4014513-4014582)
chr5 (7-72)||(10391265-10391329)
chr5 (47-103)||(13697903-13697959)
chr5 (2-55)||(40048369-40048422)
chr5 (1-73)||(3566406-3566478)
chr5 (29-95)||(6096435-6096497)
chr5 (1-37)||(10363696-10363732)
chr5 (6-42)||(13224370-13224406)
chr5 (10-70)||(38819672-38819731)
chr5 (48-84)||(40426651-40426687)
[»] chr6 (24 HSPs)
chr6 (1-86)||(264268-264353)
chr6 (1-105)||(2734949-2735051)
chr6 (1-95)||(32206108-32206202)
chr6 (1-73)||(33736748-33736820)
chr6 (29-91)||(31686560-31686622)
chr6 (1-62)||(9093644-9093705)
chr6 (4-52)||(781316-781364)
chr6 (9-73)||(31668781-31668844)
chr6 (4-39)||(281939-281974)
chr6 (1-95)||(430464-430558)
chr6 (1-84)||(10617000-10617081)
chr6 (29-100)||(35069436-35069506)
chr6 (4-61)||(2514625-2514681)
chr6 (1-42)||(10645414-10645455)
chr6 (1-37)||(1402942-1402978)
chr6 (4-72)||(4248870-4248937)
chr6 (32-84)||(6538406-6538458)
chr6 (4-88)||(6654510-6654594)
chr6 (1-73)||(7351696-7351767)
chr6 (1-73)||(8349752-8349823)
chr6 (32-84)||(18076085-18076137)
chr6 (4-72)||(22742278-22742345)
chr6 (4-52)||(24836290-24836338)
chr6 (1-88)||(31623978-31624066)
[»] scaffold0024 (2 HSPs)
scaffold0024 (4-105)||(27454-27555)
scaffold0024 (1-62)||(21366-21427)
[»] scaffold0590 (1 HSPs)
scaffold0590 (4-52)||(1165-1213)
[»] scaffold0275 (1 HSPs)
scaffold0275 (4-52)||(2762-2810)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37841980 - 37841758
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtttaccaaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37841980 ttaactttattttatcatttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtttaccaaa 37841881  T
Q  101 cagggctaaatactattattgggtgaaagctttagaatggttttatatcaaacatttctcttcgcattagagtgcttaggaatgaaattgaagtgttgac 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37841880 cagggctaaatactattattgggtgaaagcttaagaatggttttatatcaaacatttctcttcgtattagagtgcttaggaatgaaattgaagtgttgac 37841781  T
Q  201 aatgtgcatacttatcttacttt 223  Q
    |||||||||||||||||||||||    
T  37841780 aatgtgcatacttatcttacttt 37841758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 48064288 - 48064197
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||||||| |||| ||||| ||| | || ||||| || ||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  48064288 actttattttatcttttgctatagaaattgtttctacattaggactaatcatgataagggcttatgctataagctgcaaattaagttgttta 48064197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 9507088 - 9507194
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtttaccaaa 100  Q
    ||||| |||||||| | |||||||||| ||||||||||||||||||  |||| ||||||||  |||||||||| || ||  |||||||||||||| ||||    
T  9507088 ttaacattattttaacttttgttatagaaatagcttatacatgagtgtttattatgataagcacttatgctataagatgacaattaagttgtttatcaaa 9507187  T
Q  101 cagggct 107  Q
    || ||||    
T  9507188 caaggct 9507194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4549848 - 4549759
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagtt 90  Q
    |||||||||||||||| |||||||||| |||||||| ||||| || | ||||| || |||| | ||||||||| ||||||||||||||||    
T  4549848 ttaactttattttatcttttgttatagaaatagcttgtacataagcatttatcgtgctaagcgtttatgctataagctgcaaattaagtt 4549759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 31517828 - 31517912
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaag 88  Q
    |||||||||||||||| |||||| ||| ||||||| ||| |||  ||||||||||||||| |||||||||||| ||||||||||||||    
T  31517828 ttaactttattttatcttttgttgtagaaatagct-atatatg--tacttatcatgataaatgcttatgctataagctgcaaattaag 31517912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38578509 - 38578423
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaag 88  Q
    |||||||||| ||||| |||||||||| ||||||||||||| |  || ||||||||||||| ||||||||||| ||||| ||||||||    
T  38578509 ttaactttatgttatcttttgttatagaaatagcttatacaagttta-ttatcatgataagcgcttatgctataagctgtaaattaag 38578423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 37593758 - 37593868
Alignment:
Q  2 taactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaa 100  Q
    |||| |||||||||| | |||||||| |||| ||||||||| |  ||||||| ||||||| |||| |||| | ||||||||||||||||||||| ||||     
T  37593758 taacattattttatcttgtgttatagaaataccttatacataaacacttatcgtgataagcgcttttgctttaagctgcaaattaagttgtttatccaag 37593857  T
Q  101 cagggctaaat 111  Q
    |||| ||||||    
T  37593858 caggcctaaat 37593868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 10744288 - 10744196
Alignment:
Q  3 aactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||| ||| | ||   |||||||||||||| || |||| |||||||||| ||||||||||| |||||  ||||||||||||||    
T  10744288 aactttattttatcttttttcatcaaaatagcttatacattagcacttgtcatgataagcgcttatgctataagctgagaattaagttgttta 10744196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 8852841 - 8852773
Alignment:
Q  2 taactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgc 70  Q
    ||||||||||||||| |||||| ||  |||||||||||||| |||  ||||||||||||| ||||||||    
T  8852841 taactttattttatcttttgttgtaaaaatagcttatacattagtgtttatcatgataagcgcttatgc 8852773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 27820475 - 27820532
Alignment:
Q  48 cttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacaggg 105  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||    
T  27820475 cttatcatgataagcgcttatgctataagctgcaaa-taagttgtttatccaaacaggg 27820532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4445690 - 4445595
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttat---catgataagtgcttatgctattagctgcaaattaagttgtt 93  Q
    ||||||||||| |||  |||||||||| |||||| ||||||| ||| |||||   ||| ||||||||||||| ||  |||||||||||||| ||||    
T  4445690 ttaactttattgtattttttgttatagaaatagcctatacataagtgcttattatcatcataagtgcttatgttacaagctgcaaattaagctgtt 4445595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 23895313 - 23895249
Alignment:
Q  6 tttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgct 71  Q
    ||||||||||| |||||||||| |||||||||||||| |  |||||| |||||||| |||||||||    
T  23895313 tttattttatcttttgttatagaaatagcttatacataataacttat-atgataagggcttatgct 23895249  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 35058893 - 35058949
Alignment:
Q  50 tatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacaggg 105  Q
    |||||||||||||||||||||||| || |||||| |||| |||||| ||||||||||    
T  35058893 tatcatgataagtgcttatgctataagttgcaaaataagctgtttatccaaacaggg 35058949  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 38247394 - 38247342
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||||||||| ||| | ||||||||||||||||| |||||| ||||||||||    
T  38247394 agcttatacataagtgcatatcatgataagtgcttgtgctataagctgcaaat 38247342  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 42169633 - 42169734
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaaca 102  Q
    ||||||||||||| | |||||||| |||| |||||| || |||   ||||||||| ||| |||||||||| ||  || |||||||||||||| |||||||    
T  42169633 actttattttatcttctgttatagaaataacttatagataagtgaatatcatgatgagtccttatgctatgag--gctaattaagttgtttatccaaaca 42169730  T
Q  103 gggc 106  Q
    ||||    
T  42169731 gggc 42169734  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 45999379 - 45999427
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||| ||||| |||||||||| ||||||||||||||||| ||||||    
T  45999379 actttatcttatcttttgttatagaaatagcttatacatgagcacttat 45999427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9572196 - 9572279
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||||||||||||||| |||| ||||| ||||||| |||||| ||  || ||||||||| |  ||| |||||| ||||||||||    
T  9572196 ttaactttattttatcttttgctatagaaatagctaatacattagcgctgatcatgataggcacttgtgctataagctgcaaat 9572279  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27146336 - 27146419
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||| ||||||||||| |||| | ||| |||| ||||||||| |   |||||||||||| || |||||||||| ||||||||||    
T  27146336 ttaaatttattttatcttttgctgtagaaataccttatacataaacgcttatcatgatatgtacttatgctataagctgcaaat 27146419  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 46252770 - 46252857
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaag 88  Q
    |||||||||||||||| |||||||||  |||||| ||||||| ||| | ||||||||| |   ||||| |||| ||||| ||||||||    
T  46252770 ttaactttattttatcttttgttataaaaatagcctatacattagtgcatatcatgattaacacttatactataagctgaaaattaag 46252857  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 4700155 - 4700205
Alignment:
Q  2 taactttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||||||||||| |||||||||| |||||||| ||||| ||| |||||    
T  4700155 taactttattttatcttttgttatagaaatagcttgtacataagtgcttat 4700205  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 7137090 - 7137172
Alignment:
Q  2 taactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||||||||||| | |||||||||  ||||| ||||| || ||  ||||||| ||||||||| |||||||| | ||||||||    
T  7137090 taactttattttaacttttgttataaaaatagtttatatataagcgcttatcaagataagtgcctatgctataaactgcaaat 7137172  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 44236621 - 44236659
Alignment:
Q  3 aactttattttatcgtttgttataggaatagcttataca 41  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  44236621 aactttattttatcatttgttataggaatagcttctaca 44236659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 49557123 - 49557062
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtg 63  Q
    |||||||||||||||| |||||||||| |||| ||||||||  || |||||| ||||||||||    
T  49557123 ttaactttattttatcttttgttatagaaataacttatacagcagcacttat-atgataagtg 49557062  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 50319271 - 50319233
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacat 42  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  50319271 actttattttatcttttgttatagaaatagcttatacat 50319233  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 172665 - 172706
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacat 42  Q
    |||||||||| ||||| |||||||||| ||||||||||||||    
T  172665 ttaactttatgttatcttttgttatagaaatagcttatacat 172706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4256130 - 4256190
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    ||||||||||| |||| |||||| ||| |||||||||||||| |  || ||||||||||||    
T  4256130 ttaactttattgtatcttttgttgtagaaatagcttatacataaacacgtatcatgataag 4256190  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 10199536 - 10199576
Alignment:
Q  57 ataagtgcttatgctattagctgcaaattaagttgtttacc 97  Q
    ||||||| ||||||||| ||||||||| |||||||||||||    
T  10199536 ataagtgtttatgctataagctgcaaaataagttgtttacc 10199576  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 17884050 - 17883956
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||| ||||| |||||||||| |||||||||| ||||  |||||||||||||||    
T  17884050 ttaactttattttatcttttgttatagaaatagcttacacatgagcacttaccatgataagtccttatgctataagctaaaaattaagttgttta 17883956  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 42641721 - 42641815
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||| |||||||||| |||||||| | |||||||||||||| |  |||||||||||||||||||||||  || |||||||||||||| ||||||    
T  42641721 ttaacattattttatcttttgttatggaaatagcttatacataaacacttatcatgataagtgcttatgtaataagctgcaaattaagctgttta 42641815  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 26520317 - 26520423
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaa 99  Q
    |||||||||||| ||| |||||||||| || || |||||||| ||| |||||||||||||   |||||||||  ||| ||||||||||||||||| ||||    
T  26520317 ttaactttatttcatcttttgttatagaaacagtttatacataagtgcttatcatgataaacacttatgctagaagcagcaaattaagttgtttatccaa 26520416  T
Q  100 acagggc 106  Q
    |||||||    
T  26520417 acagggc 26520423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2987171 - 2987077
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||||  |||||| ||| ||||||||||| || ||| |||||||||||||   |||||| ||| ||||||||||||| |||||||    
T  2987171 ttaactttattttattttttgttgtagaaatagcttataaataagtgcttatcatgataaacacttatgttataagctgcaaattaacttgttta 2987077  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2733302 - 2733213
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagtt 90  Q
    |||||||||||||||| ||| | |||  ||| |||||||||| ||| | |||||||| ||||||||||||||| ||||||| ||||||||    
T  2733302 ttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagtgcttatgctataagctgcatattaagtt 2733213  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 30066865 - 30066948
Alignment:
Q  12 ttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||| |||| ||||  |||||||||||||  ||| |||||||| ||||| ||||||||||| ||||||||||||| |||||||    
T  30066865 ttatcttttggtatataaatagcttatacacaagtgcttatcattataagcgcttatgctataagctgcaaattaaattgttta 30066948  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 45516735 - 45516640
Alignment:
Q  5 ctttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtttaccaaa 100  Q
    ||||||||||   ||||||||||||||| ||||||||| |  | ||||||||||||    ||||||||| |||||||||||||| |||||||||||    
T  45516735 ctttattttagtttttgttataggaataacttatacataaacatttatcatgataaacatttatgctataagctgcaaattaagatgtttaccaaa 45516640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 3155585 - 3155492
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||||| |||| ||||| ||||||||||||||   | |||||||||||||| |||| | |||| ||||||| | |||||||||||    
T  3155585 ttaactttattttatcttttgctatagaaatagcttatacatacatgcttatcatgataagcgcttgtactataagctgcaga-taagttgttta 3155492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26883977 - 26883883
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||| ||||||||  || ||| || |||| ||||||||| |  |||||||| |||||| |||||||||||  ||||||||||||||||||||    
T  26883977 ttaacttcattttatctcttcttagagaaataacttatacataatcacttatcaagataagcgcttatgctatatgctgcaaattaagttgttta 26883883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 6364128 - 6364071
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    ||||||||||||| |||||||||| |||||||||||||| ||| |||||| |||||||    
T  6364128 actttattttatcttttgttatagaaatagcttatacataagtgcttatcttgataag 6364071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 44319928 - 44319861
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    ||||||||||||| ||| |||||| ||||| ||||||||||| |||||| ||||||||||||||||||||    
T  44319928 actttattttatctttt-ttatagaaatagtttatacatgagcacttat-atgataagtgcttatgctat 44319861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 50298480 - 50298419
Alignment:
Q  34 cttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||| || | ||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  50298480 cttatacataagcatttatcatgataagtgtttatgctataagcttcaaattaagttgttta 50298419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23503541 - 23503474
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttat 68  Q
    |||||||||||||||  |||||||||| | ||| |||||||| || ||||||||||||||| ||||||    
T  23503541 ttaactttattttatattttgttatagaattagattatacataagcacttatcatgataagcgcttat 23503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 17751231 - 17751309
Alignment:
Q  22 ttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtttaccaaa 100  Q
    |||||| ||||||||||| || ||  |||||||| | ||||||||||||||| |||||||| |||||||| ||| ||||    
T  17751231 ttatagaaatagcttataaataagcgcttatcattacaagtgcttatgctataagctgcaatttaagttgattatcaaa 17751309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 19039763 - 19039657
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaa 99  Q
    ||||||| ||||||||  ||||||||  |||| |||||   | || |||||||||||||| ||| |||  ||| ||||||||||||||||||||| ||||    
T  19039763 ttaacttcattttatctcttgttataaaaataacttatgactaagcacttatcatgataattgcctatattataagctgcaaattaagttgtttatccaa 19039664  T
Q  100 acagggc 106  Q
    |||||||    
T  19039663 acagggc 19039657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 44863078 - 44863143
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||| ||| || ||||||||||| |||||||| |||||| ||||||||| |||||||||||    
T  44863078 aatagcttatgcataagcacttatcatgacaagtgcttgtgctataagctgcaaa-taagttgttta 44863143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7601741 - 7601700
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacat 42  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
T  7601741 ttaactttattttatcctttgctataggaatagcttatacat 7601700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 10206033 - 10206081
Alignment:
Q  47 acttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||| |||||||||||||||| ||| | |||||||||||||||||||||    
T  10206033 acttgtcatgataagtgcttaagctgtaagctgcaaattaagttgttta 10206081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 24444015 - 24443949
Alignment:
Q  6 tttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    ||||||||||  |||||| ||| ||| |||||||||| || |||||| ||||||||||||||||||||    
T  24444015 tttattttatattttgttgtagaaatcgcttatacataagaacttat-atgataagtgcttatgctat 24443949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 44138541 - 44138458
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||||||||||||||| | || ||||| || ||||||||||| || |  ||||||||||||||||| | |||  ||||||||||    
T  44138541 ttaactttattttatcttctgctatagaaacagcttatacataagcaagtatcatgataagtgcttgtactaaaagctgcaaat 44138458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11389508 - 11389415
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||| |||||| ||| |||||| ||||  |||||||| || |||||||||||||||  || ||| ||| | ||||||| |||||||||||    
T  11389508 ttaactttactttatctttttttatagaaataatttatacataagcacttatcatgataagcactcatgatataaactgcaaa-taagttgttta 11389415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 51044550 - 51044588
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacat 42  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  51044550 actttattttatcttttgttatagaaatagcttatacat 51044588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 18782896 - 18782941
Alignment:
Q  44 agtacttatcatgataagtgcttatgctattagctgcaaattaagt 89  Q
    |||||| ||||||||||||||||||| ||| |||||||| ||||||    
T  18782896 agtactaatcatgataagtgcttatgatataagctgcaagttaagt 18782941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 22684607 - 22684644
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttataca 41  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  22684607 actttattttaccgtttgttatagaaatagcttataca 22684644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24160972 - 24160931
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacat 42  Q
    ||||||| |||||||| |||||||||| ||||||||||||||    
T  24160972 ttaacttgattttatcctttgttatagaaatagcttatacat 24160931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 47970297 - 47970229
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||| |||||||| |||||||||| |||||||||||||| || |||||| |||| |||| |||| |||||    
T  47970297 acttcattttatcttttgttatagaaatagcttatacataagcacttat-atgacaagtccttacgctat 47970229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 51555958 - 51556022
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatg 69  Q
    ||||||||||||| |||||||||  |||||||||||||| || |||||| ||||||| || |||||    
T  51555958 actttattttatcttttgttataataatagcttatacataagcacttat-atgataaatggttatg 51556022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 21731751 - 21731819
Alignment:
Q  11 tttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctg 79  Q
    |||||| |||| ||||  |||||||||||| | || ||||||||||||||| |||| |||||| |||||    
T  21731751 tttatcttttgctataaaaatagcttatacgtaagcacttatcatgataagcgcttgtgctataagctg 21731819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 30024679 - 30024631
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||||||||| |||||||||| |||| ||||| ||| |||||||||    
T  30024679 actttattttatcttttgttatagaaataacttatgcataagtacttat 30024631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44249268 - 44249208
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    |||||||| ||||||| |||||||| | |||| ||||||||| | | ||||||||||||||    
T  44249268 ttaactttgttttatcttttgttattgaaataacttatacataattgcttatcatgataag 44249208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 46401194 - 46401158
Alignment:
Q  49 ttatcatgataagtgcttatgctattagctgcaaatt 85  Q
    |||||||||||||||||||| |||| |||||||||||    
T  46401194 ttatcatgataagtgcttatactataagctgcaaatt 46401158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 9833132 - 9833043
Alignment:
Q  6 tttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||||| |||||||| | ||||| |||||||| |||  |||||||||||| |||||||||||| ||||| |||||||||||||||    
T  9833132 tttattttatcttttgttatggaaatagattatacataagtgtttatcatgataaatgcttatgctataagctgtaaattaagttgttta 9833043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 30990459 - 30990562
Alignment:
Q  3 aactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaac 101  Q
    |||||||||||||| |||||||||| || ||||||||||| || ||||  |||| |||| |||||||||||||||  ||||||||| |||||| ||||||    
T  30990459 aactttattttatcatttgttatagaaagagcttatacataagcacttgccatggtaagcgcttatgctattagcaacaaattaagatgtttatccaaac 30990558  T
Q  102 aggg 105  Q
    ||||    
T  30990559 aggg 30990562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 39567885 - 39567791
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||||| |||||||||| |||| ||||||||  ||| |||||||||||||| |||||||| || |||||  ||||||| ||||||    
T  39567885 ttaactttattttatcttttgttatagaaatatcttatacacaagtgcttatcatgataagcgcttatgcaataagctgtgaattaagctgttta 39567791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 26626824 - 26626765
Alignment:
Q  35 ttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||| |||| ||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  26626824 ttatacataagtatttatcatgataagagcttatgctataagctgcaaa-taagttgttta 26626765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 32364832 - 32364900
Alignment:
Q  21 gttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagt 89  Q
    ||||||| |||||||||||||| ||| ||||||||||||||| || ||||||| |||| |||| |||||    
T  32364832 gttatagaaatagcttatacataagtgcttatcatgataagttctcatgctataagctacaaaataagt 32364900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 26143731 - 26143832
Alignment:
Q  3 aactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaac 101  Q
    |||||||||||||| |||| ||||| |||||||||||||  ||| | ||||||| ||||||||| || ||| | ||||||| ||||||||||| ||||||    
T  26143731 aactttattttatcttttgctatagaaatagcttatacacaagtgc-tatcatggtaagtgcttgtgttataaactgcaaa-taagttgtttatccaaac 26143828  T
Q  102 aggg 105  Q
    ||||    
T  26143829 aggg 26143832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36114611 - 36114685
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgata--agtgcttatgctat 73  Q
    |||||||||||||||| |||||||||| | ||| |||| ||| || |||||||||||||  ||||||||||||||    
T  36114611 ttaactttattttatcttttgttatagaactaggttatgcataagcacttatcatgatatgagtgcttatgctat 36114685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 41170467 - 41170419
Alignment:
Q  44 agtacttatcatgataagtgcttatgctattagctgcaaattaagttgtt 93  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  41170467 agtacttatcatgataagtgcttatgctataagctg-aaattaagctgtt 41170419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4026799 - 4026739
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    |||||||||||||||| |||| ||||  ||||||||||| || || |||||||||||||||    
T  4026799 ttaactttattttatcttttgctataaaaatagcttatagataagcacttatcatgataag 4026739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 38239642 - 38239709
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgcta 72  Q
    |||| |||||||| |||||||||| |||||||||||||| |  ||||| |||||| |||||||||||||    
T  38239642 acttgattttatcttttgttatagaaatagcttatacataaacactta-catgatgagtgcttatgcta 38239709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 41702320 - 41702380
Alignment:
Q  48 cttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagggct 107  Q
    |||||||||||||||| || |||||| ||||| |||||||| |||||| ||||||||||||    
T  41702320 cttatcatgataagtgtttttgctataagctgaaaattaagctgtttatccaaacagggct 41702380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 9395108 - 9395029
Alignment:
Q  5 ctttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||||||||||| |||  ||||| || | |||||||||||||  ||||||||||||| |||| |||||| ||| ||||||    
T  9395108 ctttattttatctttttctatagaaaaatcttatacatgagtgtttatcatgataagagcttgtgctataagccgcaaat 9395029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 19608741 - 19608796
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||||||||||||| ||| ||||||||| || |||||| |||||| ||||||||||    
T  19608741 aatagcttatacataagtgcttatcatggtatgtgcttgtgctataagctgcaaat 19608796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 41407242 - 41407191
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaa 83  Q
    ||||||||||| ||| |||||||||||||| |||| |||||| |||||||||    
T  41407242 agcttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaa 41407191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 44438980 - 44439023
Alignment:
Q  54 atgataagtgcttatgctattagctgcaaattaagttgtttacc 97  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||    
T  44438980 atgataagtgcctatgctataagctgcaaattaagctgtttacc 44439023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 44600523 - 44600449
Alignment:
Q  1 ttaactttattttatcgttt--gttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||||||||||| |||  | ||||| |||||||||||||| || |||||||| ||||||||  ||||||||    
T  44600523 ttaactttattttatctttttggctatagaaatagcttatacataagcacttatcacgataagtgtctatgctat 44600449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 5133750 - 5133685
Alignment:
Q  5 ctttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||||||| |||||||||| |||||||||||||| || |   |  ||||||||||||||||||||    
T  5133750 ctttattttatcttttgttatagaaatagcttatacataagca---aatatgataagtgcttatgctat 5133685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 17952792 - 17952853
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgctt 66  Q
    ||||||||||||| |||||||||| ||||||||||| || ||  ||||| |||||||||||||    
T  17952792 actttattttatcttttgttatagaaatagcttatatataagctcttat-atgataagtgctt 17952853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 10198569 - 10198657
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtt 93  Q
    ||||||||||||| ||  ||||| ||||||||||||||  ||||||||| ||||||||  || ||||||| |||  | ||||||||||||    
T  10198569 actttattttatctttacttatatgaatagcttatacaaaagtacttat-atgataagcactcatgctataagcacctaattaagttgtt 10198657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 15288711 - 15288800
Alignment:
Q  18 tttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagggc 106  Q
    |||||||||| |||||||||||||| ||  |||||| |||| || | ||||||||| ||||  |||||||| |||| | |||||||||||    
T  15288711 tttgttatagaaatagcttatacataagcgcttatcttgatgagagtttatgctataagctataaattaagctgttaatccaaacagggc 15288800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 29628837 - 29628890
Alignment:
Q  8 tattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    ||||||||| |||||||||| |||| ||| || || ||||||||||||||||||    
T  29628837 tattttatcttttgttatagaaataacttttatataagtacttatcatgataag 29628890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 43570351 - 43570303
Alignment:
Q  48 cttatcatgataagtgcttatgctattagctgcaaattaagttgtttacc 97  Q
    ||||||||||||||||||| |||||| ||||||||| |||| ||||||||    
T  43570351 cttatcatgataagtgcttgtgctataagctgcaaa-taagctgtttacc 43570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 44590011 - 44589934
Alignment:
Q  7 ttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||| ||||| |||| ||||| || | ||||||||| || ||||||||||||||| |||||| |||| |||| |||||    
T  44590011 ttatcttatcatttgctatagaaacaacttatacataagcacttatcatgataagcgcttatactataagctccaaat 44589934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3611208 - 3611152
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatga 57  Q
    |||||||||||||| | |||| ||||| |||| ||||||||| || |||||||||||    
T  3611208 ttaactttattttaccttttgctatagaaataacttatacataagcacttatcatga 3611152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 12313307 - 12313363
Alignment:
Q  48 cttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacag 103  Q
    |||||||||||| |||||||| |||| ||||||||| |||| |||||| ||||||||    
T  12313307 cttatcatgatacgtgcttatactataagctgcaaaataagatgtttatccaaacag 12313363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25609775 - 25609727
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||||||||| ||| |||||| |||||||||||||| || ||||||    
T  25609775 actttattttatcttttcttatagaaatagcttatacataagcacttat 25609727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 41880642 - 41880694
Alignment:
Q  53 catgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagg 104  Q
    ||||||||| |||| |||||| ||||||||| ||||||||||| |||||||||    
T  41880642 catgataagcgcttgtgctataagctgcaaagtaagttgtttatccaaacagg 41880694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42457930 - 42457858
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||||||||||| |||  ||||| ||||| |||||||| | | |||||||||||| | |||| ||||||    
T  42457930 ttaactttattttatcttttactatagaaatagattatacataaatgcttatcatgataggcgcttgtgctat 42457858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 42659280 - 42659332
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||||||||| ||  ||||||||||||||||  | |||||||||||||||||    
T  42659280 agcttatacataagcgcttatcatgataagtgtgtgtgctattagctgcaaat 42659332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43199396 - 43199300
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat-tag-ctgcaaattaagttgttta 95  Q
    |||||||||||||||| |||||| ||| |||| ||||||||  ||  |||| |||||||  |  ||||||||| ||| |||||||||||||||||||    
T  43199396 ttaactttattttatcttttgttgtagaaataacttatacagaagcgcttaacatgatacatagttatgctatatagactgcaaattaagttgttta 43199300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37444503 - 37444586
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||||||| |||||| |||||||||| |||||||||||||| ||  |||||||||||||||||||||||| | | ||||||||    
T  37444503 ttaactttactttatcttttgttatagtaatagcttatacataagcgcttatcatgataagtgcttatgctttaacctgcaaat 37444586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 41442525 - 41442617
Alignment:
Q  3 aactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||| ||  |||||||||| || ||| ||||||| |||||||||||||||||||| ||||||||| ||||  |||||||| ||||||    
T  41442525 aactttatttaatattttgttatagaaaaagcctatacataagtacttatcatgataagtgtttatgctataagctaaaaattaagctgttta 41442617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 16210975 - 16211046
Alignment:
Q  2 taactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    ||||||||||||||| |||  ||||| |||||||||||||||||| | ||||||||||||||||| ||||||    
T  16210975 taactttattttatcatttactatagaaatagcttatacatgagtgcgtatcatgataagtgcttgtgctat 16211046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26215478 - 26215385
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||  |||||||| ||||| |||  |||||| ||||| ||| |||||||||||    
T  26215478 ttaactttattttatcttttgttatagaaatagcttatacataagcgcttatcattataagcgctcgtgctataagctg-aaaataagttgttta 26215385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 2840313 - 2840247
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||| ||| || |||||||||||||||  |||||||||| ||||||||| |||||||||||    
T  2840313 aatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagttgttta 2840247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 2845000 - 2844934
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||| ||| || |||||||||||||||  |||||||||| ||||||||| |||||||||||    
T  2845000 aatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagttgttta 2844934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 43730731 - 43730665
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||| |||||||||||||||||    ||||||||  |||||||||||||||||||||    
T  43730731 aatagcttatacataagtacttatcatgataaacttttatgctaaaagctgcaaattaagttgttta 43730665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 3936827 - 3936763
Alignment:
Q  5 ctttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatg 69  Q
    |||||||||||| |||||||||| ||||| |||||||| ||| | |||||||||||| |||||||    
T  3936827 ctttattttatcctttgttatagaaatagattatacataagtgcctatcatgataagcgcttatg 3936763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 9956902 - 9956993
Alignment:
Q  3 aactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||| |||||||||| ||||||| | |||| ||    ||||||||||||||||| |||||| |||| |||| |||||||||||    
T  9956902 aactttattttatcttttgttatagaaatagctcaaacataagcgtgtatcatgataagtgcttgtgctataagctacaaa-taagttgttta 9956993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 42597380 - 42597332
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  42597380 actttattttatcttttgttatagaaatagcttatacataagtacttat 42597332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 28769430 - 28769498
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||| ||||||| |||||||||||||||||||||||||| || | |||| ||||||||  ||||||||||    
T  28769430 acttaattttatagtttgttataggaatagcttatacataagcatttat-atgataagcacttatgctat 28769498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 10114466 - 10114394
Alignment:
Q  7 ttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctg 79  Q
    |||||||||| |||| ||||| |||||||||||||| || ||||||||| ||||   |||||||||| |||||    
T  10114466 ttattttatcttttgctatagaaatagcttatacataagcacttatcatcataaccacttatgctataagctg 10114394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 2833446 - 2833505
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaag 88  Q
    |||||||||| ||| || |||||||||||||||  |||||||||| ||||||||| ||||    
T  2833446 aatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 2833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 8216853 - 8216790
Alignment:
Q  10 ttttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    ||||||| |||||||||  ||| |||||||||| |||  ||||||||||||||| |||||||||    
T  8216853 ttttatcttttgttatataaatggcttatacataagtgtttatcatgataagtgtttatgctat 8216790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 14956424 - 14956486
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||||| ||| |||||||||||||| | || |||||| ||||||||| |||||||||||    
T  14956424 agcttatacataagtgcttatcatgataagcgattgtgctataagctgcaaa-taagttgttta 14956486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 31916516 - 31916469
Alignment:
Q  48 cttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||| |||||||| || |||||||||| ||||||||||    
T  31916516 cttatcatgataagcgcttatgccataagctgcaaatgaagttgttta 31916469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 31916592 - 31916529
Alignment:
Q  6 tttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatg 69  Q
    ||||| ||||| |||||||||| |  ||||||||||| ||  ||||||||||||||||||||||    
T  31916592 tttatgttatcttttgttatagaataagcttatacataagcgcttatcatgataagtgcttatg 31916529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32976399 - 32976356
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatga 44  Q
    |||||||||||||||| |||||||||| |||||| |||||||||    
T  32976399 ttaactttattttatcttttgttatagaaatagcgtatacatga 32976356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 35869814 - 35869748
Alignment:
Q  6 tttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    ||||||||||  |||||| ||| ||| |||||||||| || |||||| ||||||||||||||||||||    
T  35869814 tttattttatattttgttgtagaaatcgcttatacataagaacttat-atgataagtgcttatgctat 35869748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 40015018 - 40015076
Alignment:
Q  50 tatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagggct 107  Q
    ||||||||||| |||||||| |||||||| ||||| |||||||||| ||||||| ||||    
T  40015018 tatcatgataaatgcttatgatattagctacaaatcaagttgtttagccaaacatggct 40015076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4558780 - 4558739
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacat 42  Q
    |||||||||||||||| ||| |||||| ||||||||||||||    
T  4558780 ttaactttattttatcttttattatagaaatagcttatacat 4558739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 12972838 - 12972746
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttt 94  Q
    |||| ||||||| ||| | |||||| | |||||||||||||| || |||||| ||||||| |||||||||||| |||    |||||||||||||    
T  12972838 ttaattttatttcatcttctgttattgaaatagcttatacataagcacttat-atgataaatgcttatgctataagcgcttaattaagttgttt 12972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 14482181 - 14482125
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    ||||||||||||| |||||||||| ||||| |||||||| || |||||| ||||||||    
T  14482181 actttattttatcttttgttatagaaatagtttatacataagcacttat-atgataag 14482125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 44426538 - 44426571
Alignment:
Q  64 cttatgctattagctgcaaattaagttgtttacc 97  Q
    |||||||||| |||||||||||||||||||||||    
T  44426538 cttatgctataagctgcaaattaagttgtttacc 44426571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 10120712 - 10120656
Alignment:
Q  28 gaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||||||||||| || || ||||||||||| ||  ||||||||||| ||||||||||    
T  10120712 gaatagcttatagataagcacttatcatgagaaacgcttatgctataagctgcaaat 10120656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 31751702 - 31751750
Alignment:
Q  59 aagtgcttatgctattagctgcaaattaagttgttta-ccaaacagggc 106  Q
    |||| ||||| |||| ||||||||||||||||||||| |||||||||||    
T  31751702 aagtacttatactataagctgcaaattaagttgtttatccaaacagggc 31751750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35453711 - 35453782
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||||||||||| |||||| ||| || || ||||| || ||||||||| |||| ||| |||||||||||    
T  35453711 ttaactttattttatcttttgttgtagaaacagattatatataagtacttat-atgacaagcgcttatgctat 35453782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 43250767 - 43250870
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaa 99  Q
    |||||||||||||||| |||||| |||  ||||||||||||| |   ||||||||| |||||||||| ||||| |||||||||| |||||||||| ||||    
T  43250767 ttaactttattttatcttttgttctagacatagcttatacataaaggcttatcatggtaagtgcttaagctatcagctgcaaataaagttgtttatccaa 43250866  T
Q  100 acag 103  Q
    ||||    
T  43250867 acag 43250870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 7612413 - 7612347
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||||||||  |  |||||||||||||||||||||||||| |||||||||||||||||||||    
T  7612413 aatagcttatacatatgagcttatcatgataagtgcttatgctataagctgcaaattaagttgttta 7612347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 42656494 - 42656403
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||||||| |||||||||| ||||||||||| || ||| |||||  ||||||| ||||||||||| |||| | ||| ||||||||||    
T  42656494 actttattttatcttttgttatagaaatagcttatatataagtgcttattttgataagcgcttatgctataagctactaatgaagttgttta 42656403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 28178948 - 28178893
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgata 59  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||    
T  28178948 actttattttatcttttgttatagaaatagcttatacatgagtacttgacatgata 28178893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 21619368 - 21619304
Alignment:
Q  22 ttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaatta 86  Q
    |||||| ||||||||| | || ||| ||||||||||||||||||| |||||| ||||||||||||    
T  21619368 ttatagaaatagcttagagataagtgcttatcatgataagtgcttgtgctataagctgcaaatta 21619304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 32410490 - 32410410
Alignment:
Q  28 gaatagcttatacatg-agtacttatcatgataagtgcttatgctattagctgcaaattaagttgttt-accaaacagggc 106  Q
    |||||||||||||||  | ||||||||||||||||||||| || |||  |||||||||||| |||||| ||||||||||||    
T  32410490 gaatagcttatacatacattacttatcatgataagtgcttgtgttatatgctgcaaattaatttgtttaaccaaacagggc 32410410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 35331078 - 35331019
Alignment:
Q  49 ttatcatgataagtgcttatgctattagctgcaaattaagttg-tttaccaaacagggct 107  Q
    |||||||| |||||||||||||||| ||||| ||||||||||| ||| ||||||||||||    
T  35331078 ttatcatgttaagtgcttatgctataagctgtaaattaagttgtttttccaaacagggct 35331019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 5006600 - 5006638
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacat 42  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  5006600 actttattttatcttttgttataggaatagcttatacat 5006638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40009452 - 40009359
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||||||| || |||||||||  || ||||||||||| ||  || |||||||||||| |||||| | | ||||| |||||||||||||||    
T  40009452 ttaactttattttgtcttttgttataaaaacagcttatacataagcgctaatcatgataagtacttatg-tgtaagctgaaaattaagttgttta 40009359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 40687615 - 40687721
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtttaccaaa 100  Q
    ||||| |||||||| | |||||||||| ||||| ||||| ||||||  |||| ||||||||  | |||||||| || ||  |||||||||||||| ||||    
T  40687615 ttaacattattttaacttttgttatagaaatagtttataaatgagtgtttattatgataagcacctatgctataagatgacaattaagttgtttagcaaa 40687714  T
Q  101 cagggct 107  Q
    || ||||    
T  40687715 caaggct 40687721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 47795922 - 47795856
Alignment:
Q  18 tttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||| ||||| ||||| |||||||| |||  ||||||||||||| ||||||||||| ||||||||||    
T  47795922 tttgatatagaaataggttatacataagtggttatcatgataagcgcttatgctataagctgcaaat 47795856  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 33552930 - 33553002
Alignment:
Q  22 ttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||| |||||||||||||| ||  ||||||||| ||||||||| ||| || ||||||||| |||||||||||    
T  33552930 ttatagaaatagcttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaa-taagttgttta 33553002  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 46139896 - 46139820
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttt-accaaacaggg 105  Q
    ||||||||||| || |  |||||||||||||||||||| || ||| ||||||||| |||||||||| |||||||||||    
T  46139896 aatagcttatagataatcacttatcatgataagtgcttgtgttataagctgcaaa-taagttgtttaaccaaacaggg 46139820  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 30535504 - 30535468
Alignment:
Q  58 taagtgcttatgctattagctgcaaattaagttgttt 94  Q
    |||||||||||||||| ||||||||||||||||||||    
T  30535504 taagtgcttatgctataagctgcaaattaagttgttt 30535468  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43152990 - 43153030
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttataca 41  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  43152990 ttaactttattttatcttttgttatagaaatagcttataca 43153030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 21568757 - 21568808
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaa 83  Q
    ||||||||||| ||| ||||||||||||||  |||||||||| |||||||||    
T  21568757 agcttatacataagtgcttatcatgataagcacttatgctataagctgcaaa 21568808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 45806606 - 45806657
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaa 83  Q
    ||||||||||| ||| ||||| ||||||||||||| |||||| |||||||||    
T  45806606 agcttatacataagtgcttattatgataagtgcttttgctataagctgcaaa 45806657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 40598541 - 40598475
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||||| |||||  ||| |||||||| ||| ||||||||| | || ||||||||||||||||    
T  40598541 aatagcttataaatgagcgcttgtcatgataggtgattatgctataaacttcaaattaagttgttta 40598475  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 2894797 - 2894756
Alignment:
Q  3 aactttattttatcgtttgttataggaatagcttatacatga 44  Q
    ||||||| |||||| |||||||||| ||||||||||||||||    
T  2894797 aactttaatttatcttttgttatagaaatagcttatacatga 2894756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 5373204 - 5373148
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    ||||||||||||| |||||||||| |||||| ||||||| || ||||| |||||||||    
T  5373204 actttattttatcttttgttatagaaatagcatatacataagcactta-catgataag 5373148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8960715 - 8960756
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacat 42  Q
    |||||||||||||||| |||| |||||||||||| |||||||    
T  8960715 ttaactttattttatcatttgctataggaatagcatatacat 8960756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 32156787 - 32156734
Alignment:
Q  20 tgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||| ||||| |||||||| |||||||||||| | ||| |||||||||||    
T  32156787 tgttatagaaataggttatacataagtacttatcataaaaagcgcttatgctat 32156734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 32791891 - 32791944
Alignment:
Q  54 atgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagggc 106  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| |||||||||||    
T  32791891 atgataaatgctaatgctacaagctgcaaattaagttgtttacccaaacagggc 32791944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 33673054 - 33672977
Alignment:
Q  7 ttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||||||||| |||| ||||| | |||||||||||| ||  |||||||| |||| | ||| |||||| ||||||||||    
T  33673054 ttattttatcctttgctatagaagtagcttatacataagcgcttatcataataaatacttgtgctataagctgcaaat 33672977  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34441071 - 34441030
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacat 42  Q
    |||||||||||||||||||||||| ||||||| | |||||||    
T  34441071 ttaactttattttatcgtttgttagaggaataacgtatacat 34441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 34672892 - 34672941
Alignment:
Q  56 gataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagg 104  Q
    |||||||||||||||||| ||||| |||||||| |||||| |||||||||    
T  34672892 gataagtgcttatgctataagctgaaaattaagctgtttatccaaacagg 34672941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 49060519 - 49060463
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    ||||||||||||  |||||||||| |||||||||||||| | ||||||| ||||||||    
T  49060519 actttattttattttttgttatagaaatagcttatacataaatacttat-atgataag 49060463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20881724 - 20881796
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||  ||||||| |||| |||||  |||||| |||||| ||  ||||||||||||||||||| ||||||    
T  20881724 ttaacttcgttttatcttttgctatagatatagctcatacataagagcttatcatgataagtgcttgtgctat 20881796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 31002946 - 31002994
Alignment:
Q  57 ataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagg 104  Q
    ||||| ||||||||||| || |||||||||||||||||| |||||||||    
T  31002946 ataagcgcttatgctataagatgcaaattaagttgtttatccaaacagg 31002994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 32156937 - 32156897
Alignment:
Q  55 tgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||| | ||||||||| |||||||||||||||||||||    
T  32156937 tgataagcgtttatgctataagctgcaaattaagttgttta 32156897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 33894599 - 33894555
Alignment:
Q  7 ttattttatcgtttgttataggaatagcttatacatgagtactta 51  Q
    |||||||||| |||||||||| |||||||||||||| || |||||    
T  33894599 ttattttatcttttgttatagaaatagcttatacataagcactta 33894555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 39907745 - 39907698
Alignment:
Q  57 ataagtgcttatgctattagctgcaaattaagttgtttaccaaacaggg 105  Q
    ||||||||||||||||| ||||||||| |||||||||  ||||||||||    
T  39907745 ataagtgcttatgctataagctgcaaa-taagttgttatccaaacaggg 39907698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35127459 - 35127553
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||| | |||| |||||||||| |||||| ||||||| || ||||||||||||||| ||||||| ||| |||||||||| ||| ||||||    
T  35127459 ttaactttagtatatcttttgttatagaaatagcctatacataagcacttatcatgataagagcttatggtataagctgcaaatgaagctgttta 35127553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30574002 - 30574104
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaa 99  Q
    |||||||||||||||| |||  ||||| |||||||||||||| ||  ||||||||||||| |||||||| ||| |||||||||||| | |||||| ||||    
T  30574002 ttaactttattttatctttt--tatagaaatagcttatacataagcgcttatcatgataaatgcttatgatataagctgcaaattatggtgtttatccaa 30574099  T
Q  100 acagg 104  Q
    |||||    
T  30574100 acagg 30574104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 49465751 - 49465840
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagtt 90  Q
    |||||||||||||||| |||||||||  ||||||||| |||| ||   || |||||||||||| ||||||||| | ||||||||||||||    
T  49465751 ttaactttattttatcttttgttataaaaatagcttacacataagcgtttctcatgataagtgattatgctataaactgcaaattaagtt 49465840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 47249584 - 47249639
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||||||||||||||| | |||||||||||||||||| || ||| ||||||||||    
T  47249584 aatagcttatacatgagcatttatcatgataagtgcttgtgttataagctgcaaat 47249639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 20669143 - 20669076
Alignment:
Q  19 ttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaag 88  Q
    ||||||||| |||||||||||||| ||| ||||||||||||| ||||||| |||  ||||||||| ||||    
T  20669143 ttgttatagaaatagcttatacataagtgcttatcatgataaatgcttatacta--agctgcaaactaag 20669076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2128339 - 2128380
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacat 42  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  2128339 ttaactttattttatcttttgttatagaaatagcttatacat 2128380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 22232805 - 22232742
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttat 68  Q
    ||||||||||||| |||||||||  ||||||||||||||||| | |||| |||||||| ||||||    
T  22232805 actttattttatcatttgttatataaatagcttatacatgagcatttat-atgataagagcttat 22232742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 402651 - 402721
Alignment:
Q  23 tataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttt 94  Q
    ||||| |||||||||||||| ||  ||||||||||||||  ||| |||||| ||||||||| ||||||||||    
T  402651 tatagaaatagcttatacataagcccttatcatgataagcacttgtgctatgagctgcaaa-taagttgttt 402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 29520607 - 29520658
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaa 83  Q
    ||||||||||| ||| ||||| |||||||||| ||||||||| |||||||||    
T  29520607 agcttatacataagtgcttattatgataagtgtttatgctataagctgcaaa 29520658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 1395650 - 1395612
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacat 42  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  1395650 actttattttatcttttgttatagaaatagcttatacat 1395612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 40665383 - 40665317
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||| ||||  ||| ||||||||||||||  |||||||||| |||||||||  ||||||||||    
T  40665383 aatagcttgtacagaagtgcttatcatgataagaacttatgctataagctgcaaaaaaagttgttta 40665317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 44284149 - 44284218
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctatt 74  Q
    ||||| ||||||  |||||||||| |||||||||||||| ||||||||| |||||||  ||||||| ||||    
T  44284149 actttgttttattttttgttatagaaatagcttatacattagtacttat-atgataatcgcttatggtatt 44284218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15304435 - 15304472
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttat 38  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  15304435 ttaactttattttatcttttgttatagaaatagcttat 15304472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 40122843 - 40122888
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtact 49  Q
    ||||||||||||| |||||||| | |||||||||||||| ||||||    
T  40122843 actttattttatcttttgttattgaaatagcttatacataagtact 40122888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 41028942 - 41028998
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    |||||||||| || |||||||||| |||||||||||||| || |||||| ||||||||    
T  41028942 actttattttttcttttgttatagaaatagcttatacataagcacttat-atgataag 41028998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42809283 - 42809242
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacat 42  Q
    |||||| ||||||||| |||||||||| ||||||||||||||    
T  42809283 ttaactatattttatcttttgttatagaaatagcttatacat 42809242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 905061 - 905097
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatac 40  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  905061 actttattttatcttttgttatagaaatagcttatac 905097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 2304336 - 2304416
Alignment:
Q  8 tattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaag 88  Q
    ||||||||| ||| |||||| |||||||||||||| |  |||||||||||| | ||||| || ||| || || ||||||||    
T  2304336 tattttatcttttattatagaaatagcttatacataatcacttatcatgatgaatgcttgtgttataagttgtaaattaag 2304416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 5435768 - 5435724
Alignment:
Q  47 acttatcatgataagtgcttatgctattagctgcaaattaagttg 91  Q
    |||||||||||||||  |||||||||| ||||| |||||||||||    
T  5435768 acttatcatgataagcacttatgctataagctgtaaattaagttg 5435724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 28240298 - 28240215
Alignment:
Q  11 tttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||| |||| ||| | ||||||||| | || || ||||||||||||||| |||| |||||| ||||||| | |||||||||||    
T  28240298 tttatcttttgctatcgaaatagcttaaatataagcacttatcatgataagcgcttgtgctataagctgcaga-taagttgttta 28240215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34235164 - 34235224
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    |||||||||||||||  |||| ||| | |||||||| ||||| ||| ||||||||||||||    
T  34235164 ttaactttattttatattttgctatggaaatagcttctacataagtgcttatcatgataag 34235224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 34958307 - 34958204
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttt-accaaaca 102  Q
    ||||||||||||| | |||||||| ||||| |||| ||| ||| ||||| |||||    ||||||||||| ||||||| | |||| ||||| ||||||||    
T  34958307 actttattttatcttgtgttatagaaatagtttattcataagtgcttat-atgatgcacgcttatgctataagctgcagaataagctgtttaaccaaaca 34958209  T
Q  103 gggct 107  Q
    |||||    
T  34958208 gggct 34958204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 36445713 - 36445673
Alignment:
Q  2 taactttattttatcgtttgttataggaatagcttatacat 42  Q
    |||||||||||| || |||||||||| ||||||||||||||    
T  36445713 taactttattttctcttttgttatagaaatagcttatacat 36445673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 41159088 - 41159040
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||||||||| || |||||||||||| ||||||||| || ||||||    
T  41159088 actttattttatctttagttataggaataacttatacataagcacttat 41159040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 6593282 - 6593177
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaa 99  Q
    |||||||||||||||| |||||||||| ||| | |||||||| ||  | ||||| ||||| || ||||||||| ||||| ||||||||||||||| ||||    
T  6593282 ttaactttattttatcttttgttatagaaattgtttatacataagcgcgtatcaagataaatgattatgctataagctgtaaattaagttgtttatccaa 6593183  T
Q  100 acaggg 105  Q
    ||||||    
T  6593182 acaggg 6593177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 28776955 - 28776855
Alignment:
Q  3 aactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaac 101  Q
    |||||||||||||| |||   |||  |||||||||||||| || ||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||    
T  28776955 aactttattttatctttttcaataaaaatagcttatacataagcacttatcatgataagtgcttaggctataagctgcaaa-taagttgtttatccaaac 28776857  T
Q  102 ag 103  Q
    ||    
T  28776856 ag 28776855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14674989 - 14675096
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttt-accaa 99  Q
    |||||||||||| |||  ||||||||| |||||||| ||||| || |||||||||||||| |  |||||| || ||||||||||||||||||||  ||||    
T  14674989 ttaactttattt-atcacttgttatagaaatagcttctacataagcacttatcatgataactatttatgccataagctgcaaattaagttgtttgtccaa 14675087  T
Q  100 acagggcta 108  Q
    |||||||||    
T  14675088 acagggcta 14675096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 42573884 - 42573971
Alignment:
Q  18 tttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagg 104  Q
    |||||||||| |||||||||||||| ||  |||||||||||||| ||| | ||||| |||||||||||||| |||||| |||||||||    
T  42573884 tttgttatagaaatagcttatacataagcgcttatcatgataagcgctcaggctataagctgcaaattaagctgtttatccaaacagg 42573971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5963370 - 5963464
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||||| ||  |||||| ||||| || ||||| ||  ||||||||||||| |||||||||||| |  ||||||||||||||||||    
T  5963370 ttaactttattttatctttcattatagaaatagtttgtacataagcgcttatcatgataaatgcttatgctataaattgcaaattaagttgttta 5963464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 10771983 - 10772057
Alignment:
Q  18 tttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgt 92  Q
    |||||||||| ||||||||||||||  ||  |||||||||||||  |||||||||| ||||||||||||||||||    
T  10771983 tttgttatagaaatagcttatacatatgtgtttatcatgataagcacttatgctataagctgcaaattaagttgt 10772057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 465936 - 465838
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtttaccaaa 100  Q
    |||||||||||||||| ||||| |||| ||||||||||| || ||| |||||||||| | | ||||||| ||| | ||||||| ||||||||||| ||||    
T  465936 ttaactttattttatcttttgtcatagaaatagcttatatataagtgcttatcatgaaatgagcttatgttataaactgcaaa-taagttgtttatcaaa 465838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 9202836 - 9202941
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaa 99  Q
    |||||||||||||||| |||| || || ||||||||||| || || ||||||||||||||   ||| |||||| ||||||||| |||| |||||| ||||    
T  9202836 ttaactttattttatcttttgctacagaaatagcttatatataagcacttatcatgataaacacttgtgctataagctgcaaa-taagatgtttatccaa 9202934  T
Q  100 acagggc 106  Q
    |||||||    
T  9202935 acagggc 9202941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 41059685 - 41059595
Alignment:
Q  18 tttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagggct 107  Q
    ||||| |||| |||||||||| ||| || | ||||||||||||||||||||  ||| |||| ||||||||||||||||  |||||||||||    
T  41059685 tttgtgatagaaatagcttatgcataagcaattatcatgataagtgcttatcatataagctacaaattaagttgtttagacaaacagggct 41059595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 20982226 - 20982294
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    ||||||||||||| |||||||||| |||||||||||||| || |||||| ||||||||  ||||||||||    
T  20982226 actttattttatcctttgttatagaaatagcttatacataagcacttat-atgataagcacttatgctat 20982294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 26516275 - 26516187
Alignment:
Q  6 tttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||||| |||||| ||| |||||||||||||| || |||||| |||||||| ||||||||||| |||    ||||||||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttat-atgataagcgcttatgctataagcgcttaattaagttgttta 26516187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 30291195 - 30291140
Alignment:
Q  49 ttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacag 103  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||    
T  30291195 ttatcatgataagtgtttatgctataagctgcaaattaagttggttatccaaacag 30291140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 6738498 - 6738566
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||||| || ||| |||| | |||||||||||||| ||||||||| |||||||||| |||||||||    
T  6738498 actttattttgtcttttattattgaaatagcttatacataagtacttat-atgataagtgtttatgctat 6738566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 39105424 - 39105363
Alignment:
Q  23 tataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||| |||||||||||||| ||  ||||||||||||||  |||||||||| ||||||||||    
T  39105424 tatagaaatagcttatacataagcgcttatcatgataagcacttatgctataagctgcaaat 39105363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1465107 - 1465179
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||||||||||| | || ||||| |||||||||||||| ||  |||||| |||||||  ||||||||||    
T  1465107 ttaactttattttatcctatgctatagaaatagcttatacataagcgcttatcttgataagcacttatgctat 1465179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 24030531 - 24030583
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    |||||||||| | | |||||||||||||||||||| |||||| ||||||||||    
T  24030531 agcttatacacgcgcacttatcatgataagtgcttgtgctataagctgcaaat 24030583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 41819594 - 41819498
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtttacc 97  Q
    |||| ||||||||||| |   |||||| |||||||||||||  |   || ||||||||||||| ||||||||| ||||| ||||||||||| |||||    
T  41819594 ttaaatttattttatcttccattatagaaatagcttatacaaaaccgctcatcatgataagtgtttatgctataagctgtaaattaagttgcttacc 41819498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 2568598 - 2568539
Alignment:
Q  36 tatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||| || |||||||||||||||| |||| ||||| |||||| || |||||||||||    
T  2568598 tatacataagcacttatcatgataagtacttaagctataagctgctaactaagttgttta 2568539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7674630 - 7674571
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataa 60  Q
    |||| ||||||||||| |||| ||||| ||||||||||| || ||| |||||||||||||    
T  7674630 ttaaatttattttatcttttggtatagaaatagcttatatataagtgcttatcatgataa 7674571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 32372549 - 32372503
Alignment:
Q  48 cttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  32372549 cttatcatgataagtgcttgtgctataagctgcaaa-taagttgttta 32372503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 1619057 - 1618987
Alignment:
Q  18 tttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaag 88  Q
    |||||| ||| |||||||||||||  ||| |||||||| | ||| ||||||||||| ||| ||||||||||    
T  1619057 tttgttttagaaatagcttatacaaaagtgcttatcatcaaaagcgcttatgctataagcagcaaattaag 1618987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 6944873 - 6944939
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    ||||| || ||||| ||| ||||| |||||||||| ||||| ||| || ||||||||||||||||||    
T  6944873 aatagattttacattagtgcttataatgataagtgattatgttataagatgcaaattaagttgttta 6944939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 7096218 - 7096256
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacat 42  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  7096218 actttattttatcttttgttatagaaatagcttatacat 7096256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8334560 - 8334466
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||| ||||||||||| ||| |||| | ||||| ||||| || ||  | |||||||||||| ||| |||  || |||||||||||||||||||||    
T  8334560 ttaaatttattttatcattttttattgaaatagtttatagataagcgcgtatcatgataagagctaatgacataagctgcaaattaagttgttta 8334466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11835259 - 11835165
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||||| |||||||||  ||| | |||||||| |  ||||||||||||||| | ||||| ||| |  |||||| ||| |||||||    
T  11835259 ttaactttattttatcttttgttataaaaatggtttatacataaacacttatcatgataagcgtttatgttatgaattgcaaaataaattgttta 11835165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 12407752 - 12407790
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacat 42  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  12407752 actttattttatcttttgttatagaaatagcttatacat 12407790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 42582894 - 42582808
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaa 87  Q
    |||||||||||| ||| ||| | || | |||||||||||||| ||  ||||| |||||||  ||||||||||| |||||||| ||||    
T  42582894 ttaactttatttcatcttttatcatggaaatagcttatacataagcgcttattatgataaacgcttatgctataagctgcaagttaa 42582808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 4014513 - 4014582
Alignment:
Q  2 taactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgct 71  Q
    ||||||||||||||| |||| ||||| ||||||||||||||  |  ||||||||||| || |||| ||||    
T  4014513 taactttattttatcttttgctatagaaatagcttatacataggcgcttatcatgatgagcgcttctgct 4014582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 10391329 - 10391265
Alignment:
Q  7 ttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgcta 72  Q
    |||||||||| |||||||||  |||||||||||| | || |||||| |||||||||| ||||||||    
T  10391329 ttattttatcttttgttataaaaatagcttatacgtaagcacttat-atgataagtgtttatgcta 10391265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 13697903 - 13697959
Alignment:
Q  47 acttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacag 103  Q
    |||||||||||||| |||||||| ||| ||||||||| ||||||||||| ||||||||    
T  13697903 acttatcatgataaatgcttatgttataagctgcaaa-taagttgtttatccaaacag 13697959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 40048369 - 40048422
Alignment:
Q  2 taactttattttatcgtttgttataggaatagcttatacatgagtacttatcat 55  Q
    ||||||||||||||| |||||||||| || | ||||||||| || |||||||||    
T  40048369 taactttattttatcttttgttatagaaacaacttatacataagcacttatcat 40048422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3566406 - 3566478
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    ||||||||||||| || || | ||||| |||||||||||  | ||| |||||||||||||||| || ||||||    
T  3566406 ttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 3566478  T

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Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 6096497 - 6096435
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||||| ||| |||||||||||||| ||||   |||| ||||||||| |||||||||||    
T  6096497 aatagcttatacataagtgcttatcatgataagagctt---ctatgagctgcaaa-taagttgttta 6096435  T

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Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10363732 - 10363696
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagctta 37  Q
    |||||||||||||||| |||||||||| |||||||||    
T  10363732 ttaactttattttatcttttgttatagaaatagctta 10363696  T

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Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 13224406 - 13224370
Alignment:
Q  6 tttattttatcgtttgttataggaatagcttatacat 42  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  13224406 tttattttatcttttgttatagaaatagcttatacat 13224370  T

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Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 38819672 - 38819731
Alignment:
Q  10 ttttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgc 70  Q
    ||||||| |||||||||| |||||| ||||||| ||  ||||| |||||||||||||||||    
T  38819672 ttttatcttttgttatagaaatagcgtatacataagcccttat-atgataagtgcttatgc 38819731  T

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Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 40426687 - 40426651
Alignment:
Q  48 cttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  40426687 cttatcatgataagtgcttgtgctataagctgcaaat 40426651  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 264353 - 264268
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaatta 86  Q
    |||||||||||||||| |||| | ||| ||||||||||| || || |||||||||||||||  ||| |||||| ||||||||||||    
T  264353 ttaactttattttatcttttgctttagaaatagcttatatataagcacttatcatgataagcacttgtgctataagctgcaaatta 264268  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2735051 - 2734949
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaa 99  Q
    |||||||||||||||| ||||||||||  |||||||||| ||   |||||||||||||||  ||||||||| | | || ||||||||| |||||| ||||    
T  2735051 ttaactttattttatcttttgttatagacatagcttataaat---tacttatcatgataaccgcttatgctctaaacttcaaattaagctgtttatccaa 2734955  T
Q  100 acaggg 105  Q
    ||||||    
T  2734954 acaggg 2734949  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 32206108 - 32206202
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||| ||| ||||| ||||  |||||||| |||| ||| |||||||||||||| |||||||||||   || ||||||| ||||||||    
T  32206108 ttaactttatttcatcttttgtcatagagatagcttacacataagtgcttatcatgataagcgcttatgctatatcctacaaattatgttgttta 32206202  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33736820 - 33736748
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||||||||||  | |||||||| |||| ||||||||| ||| || |||||||||||||| ||||||||    
T  33736820 ttaactttattttatgttatgttatagaaataacttatacataagtgctgatcatgataagtgcctatgctat 33736748  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 31686560 - 31686622
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttg 91  Q
    |||||||||||||| || |||||||| |||||| ||||||||| |  ||||||||||||||||    
T  31686560 aatagcttatacataagcacttatcacgataagcgcttatgctgtatgctgcaaattaagttg 31686622  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9093644 - 9093705
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagt 62  Q
    |||||||||||||||| |||| ||||| |||||||||| ||| ||  |||||||||||||||    
T  9093644 ttaactttattttatcttttgatatagaaatagcttatccataagcgcttatcatgataagt 9093705  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 781364 - 781316
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||||||||| ||| |||||| |||||||||||||| |||||||||    
T  781364 actttattttatcttttattatagaaatagcttatacattagtacttat 781316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 31668781 - 31668844
Alignment:
Q  9 attttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||  |||||||||| |||||||||||||| || |||||| ||||||| ||||||||||||    
T  31668781 attttatgttttgttatagaaatagcttatacataagcacttat-atgataattgcttatgctat 31668844  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 281939 - 281974
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttata 39  Q
    ||||||||||||| ||||||||||||||||||||||    
T  281939 actttattttatcttttgttataggaatagcttata 281974  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 430464 - 430558
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtactt-atcatgataagtgcttatgctattagctgcaaattaagttgttta 95  Q
    |||||||||||| ||| |||  ||||| |||||||||||||| |||  || |||||||| |||| ||||| ||| ||||||||| |||||||||||    
T  430464 ttaactttatttcatctttttatatagaaatagcttatacataagtttttcatcatgatgagtgtttatgttataagctgcaaa-taagttgttta 430558  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10617000 - 10617081
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||||| |||||||| |||||||||| ||||| || |||||    ||||||||||||||||||||||||||| | ||||||||    
T  10617000 ttaacttcattttatc-tttgttatagaaatag-ttgtacatacacacttatcatgataagtgcttatgctataaactgcaaat 10617081  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 35069506 - 35069436
Alignment:
Q  29 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgtttaccaaa 100  Q
    |||||||||| ||| || ||||||||||||||  |||| |||||| ||||||||| ||||||||||| ||||    
T  35069506 aatagcttatgcataagcacttatcatgataaacgcttgtgctataagctgcaaa-taagttgtttatcaaa 35069436  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 2514681 - 2514625
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataag 61  Q
    ||||||||||||| ||| |||||| |||||||||||||| || ||||| |||||||||    
T  2514681 actttattttatcttttattatagaaatagcttatacataagcactta-catgataag 2514625  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10645414 - 10645455
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacat 42  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||    
T  10645414 ttaacttcattttatcgtttgctatagaaatagcttatacat 10645455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1402978 - 1402942
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagctta 37  Q
    |||||||||||||||| |||||||||| |||||||||    
T  1402978 ttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 4248937 - 4248870
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgcta 72  Q
    ||||||||||||| |||||||| | ||||||||||| || || |||||| |||| ||| ||||||||||    
T  4248937 actttattttatcttttgttattgaaatagcttatatataagcacttat-atgacaagcgcttatgcta 4248870  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 6538458 - 6538406
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||||||||| ||  |||||||| |||||||||| |||||| ||||||||||    
T  6538458 agcttatacataagcgcttatcattataagtgcttgtgctataagctgcaaat 6538406  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 6654594 - 6654510
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaag 88  Q
    |||| |||||||  |||||||||| |||| ||||||||| ||  |||||  ||||||| | | ||||||| ||||||||||||||    
T  6654594 acttaattttattatttgttatagaaataacttatacataagcccttatattgataagcgttaatgctataagctgcaaattaag 6654510  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7351696 - 7351767
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    ||||||||||||||| |||| |||||  ||||| |||||||| || | |||| |||||||| |||||||||||    
T  7351696 ttaactttattttatagtttattatataaatagtttatacataagcatttat-atgataagagcttatgctat 7351767  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8349752 - 8349823
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 73  Q
    |||||||||||||||| ||||||| || ||||| |||||||  |  |||||| |||||||||| |||||||||    
T  8349752 ttaactttattttatcttttgttagagaaatagtttatacacaaacacttat-atgataagtggttatgctat 8349823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 18076137 - 18076085
Alignment:
Q  32 agcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaat 84  Q
    ||||||||||| ||| ||||| |||||||| |||| |||||| ||||||||||    
T  18076137 agcttatacataagtgcttattatgataagcgcttgtgctataagctgcaaat 18076085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 22742345 - 22742278
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgcta 72  Q
    ||||||||||||| |||||||||  ||||||||||| || || |||||| | |||||| ||||||||||    
T  22742345 actttattttatcctttgttatacaaatagcttatagataagaacttat-acgataagcgcttatgcta 22742278  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 24836290 - 24836338
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||||||||| |||||||||| |||| ||||||||| | |||||||    
T  24836290 actttattttatcttttgttatagaaataacttatacataaatacttat 24836338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 31624066 - 31623978
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgctta-tgctattagctgcaaattaag 88  Q
    |||||||||| ||||| ||||||||  |||||||||| |||| ||| | ||||||||||| ||  || |||||| |||||||| |||||    
T  31624066 ttaactttatattatcctttgttatcagaatagcttacacataagtgcgtatcatgataaatggatattgctataagctgcaagttaag 31623978  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 27555 - 27454
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaaca 102  Q
    ||||||||||||| | |||||||| |||| ||||||||| || ||||| ||||||||| ||||||||||| |||    | |||||||||||| |||||||    
T  27555 actttattttatcttctgttatagaaataacttatacataagcactta-catgataagagcttatgctataagcgtttatttaagttgtttatccaaaca 27457  T
Q  103 ggg 105  Q
    |||    
T  27456 ggg 27454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21366 - 21427
Alignment:
Q  1 ttaactttattttatcgtttgttataggaatagcttatacatgagtacttatcatgataagt 62  Q
    |||||||||||||||| |||  ||||  |||||||||||||| ||| ||||||||| |||||    
T  21366 ttaactttattttatcttttcctataaaaatagcttatacataagtgcttatcatggtaagt 21427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 1165 - 1213
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||||||||| |||||||||| |||||||||||||| || ||||||    
T  1165 actttattttatcttttgttatagaaatagcttatacataagcacttat 1213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 2810 - 2762
Alignment:
Q  4 actttattttatcgtttgttataggaatagcttatacatgagtacttat 52  Q
    ||||||||||||| |||||||||| |||||||||||||| || ||||||    
T  2810 actttattttatcttttgttatagaaatagcttatacataagcacttat 2762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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