View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11250_low_2 (Length: 424)
Name: NF11250_low_2
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11250_low_2 |
 | |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 4222234 - 4222590
Alignment:
| Q |
1 |
agtgtagaaatttcatgttttgtcttatttatatccttagg----aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4222234 |
agtgtagaaatttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgcccttttctacactctttttcaaactaaaatatccgataaa |
4222333 |
T |
|
| Q |
97 |
atatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattaccaattgtcct |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4222334 |
atatcgtaaaagttttaagcgaaatatttcattttccatagtctgttgaaataatatgtttcagtcccgaaaagtcttattcacaattaccatttgtcct |
4222433 |
T |
|
| Q |
197 |
tccctnnnnnnntttcaaagataaaataacttatactaaattcttacatgc-aggtattacatgtattatcctttctccactaattcaagtaacacaaac |
295 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4222434 |
tccct-aaaaaattccaaagataaaataacttatactaaatttttacatgcggggtattaaatgtatcatcctttctccactaattcaagtaacacaaac |
4222532 |
T |
|
| Q |
296 |
tttacttcactttattcatttgttaaaccttagctccaacttcaacttattctcttct |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4222533 |
tttacttcactttattcatttgttaaaccttagctccaacttcaacttattctcttct |
4222590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1507761 - 1508009
Alignment:
| Q |
1 |
agtgtagaaatttcatgttttgtcttatttatatccttag---gaaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1507761 |
agtgtagaaatttcatgttttgtcttatttat-tccttagtaagaaatgcccaaaatgctcttttctacactcttcttcaaactaaaatatccgataaaa |
1507859 |
T |
|
| Q |
98 |
tatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattaccaattgtcctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
1507860 |
tatcgtaaaagttttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtcctt |
1507959 |
T |
|
| Q |
198 |
ccctnnnnnnntttcaaagataaaataacttatactaaattcttacatgc |
247 |
Q |
| |
|
|||| || |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
1507960 |
ccctaaaaaaattccaaagataaaataacttatactgaatttttacatgc |
1508009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13714628 - 13714868
Alignment:
| Q |
1 |
agtgtagaaatttcatgttttgtcttatttatatccttagg----aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13714628 |
agtgtagaaatttcatgttttgtcttatttatatccttaggtaagaaaagcccaaaatgctcttttctacactcttcttcaaactaaaatatccgataaa |
13714727 |
T |
|
| Q |
97 |
atatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattaccaattgtcct |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
13714728 |
atatcgtaaaagttttaagcgaaatatttcattctccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtcct |
13714827 |
T |
|
| Q |
197 |
tccctnnnnnnntttcaaagataaaataacttatactaaatt |
238 |
Q |
| |
|
| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
13714828 |
t-cctaaaaaaatttcaaagataaaataacttatactgaatt |
13714868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 5573769 - 5573564
Alignment:
| Q |
1 |
agtgtagaaatttcatgttttgtcttatttatatccttagg----aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
5573769 |
agtgtagaaatttcatgttttgtcttatttgtatccttaggtaagaaattaccaaaatgcccttttctacactcttgttcaaactagaatatccgataaa |
5573670 |
T |
|
| Q |
97 |
atatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattacca-attgtcc |
195 |
Q |
| |
|
||| |||||||||||||| ||||||||||| | |||||||| ||||| ||||||||||||| ||| ||||||||| | ||||||||||| |||||| |
|
|
| T |
5573669 |
ataccgtaaaagttttaaatgaaatatttcaatcaccatagtccgttgaaataatatgtttcaatcctgaaaagtcttgtgcacaattaccattttgtcc |
5573570 |
T |
|
| Q |
196 |
ttccct |
201 |
Q |
| |
|
|||||| |
|
|
| T |
5573569 |
ttccct |
5573564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 4222624 - 4222684
Alignment:
| Q |
353 |
tcagaaggtaaaggatcaacacaatgtaaagccaatttcattctattaagcaattcatctc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4222624 |
tcagaaggtaaaggatcaacacaatgtaaagccaatttcattctattaagcaattcatctc |
4222684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 5129455 - 5129259
Alignment:
| Q |
1 |
agtgtagaaatttcatgttttgtcttatttatatccttagg----aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5129455 |
agtgtagaaatttcatgttttgtcttatttatatctttaggtaagaaatgcccaaaatgcccttttctacactcttcttcaaaccaaaatatccgataaa |
5129356 |
T |
|
| Q |
97 |
atatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattaccaattgt |
193 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||| |||| |
|
|
| T |
5129355 |
atatcataaaaattttaagcgaaatatttcattccccatagtctgttgaaataatatgtttcagtcccgaaaagttttatacacaattaccatttgt |
5129259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 26618882 - 26618682
Alignment:
| Q |
1 |
agtgtagaaatttcatgttttgtcttatttatatccttagg----aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26618882 |
agtgtagaaatttcatgttttgtcttatttatatccttatgtaagaaatgtccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
26618783 |
T |
|
| Q |
97 |
atatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattaccaattgtcct |
196 |
Q |
| |
|
|||||||||| |||||||||||||||||| || ||| ||||||| | ||||||||||| |||| | ||||||||||| || |||||||| ||||||| |
|
|
| T |
26618782 |
atatcgtaaatattttaagcgaaatatttctttccccgtagtctg--gtaataatatgttttagtcacgaaaagtcttatgcagaattaccatttgtcct |
26618685 |
T |
|
| Q |
197 |
tcc |
199 |
Q |
| |
|
||| |
|
|
| T |
26618684 |
tcc |
26618682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 26724793 - 26724593
Alignment:
| Q |
1 |
agtgtagaaatttcatgttttgtcttatttatatccttagg----aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26724793 |
agtgtagaaatttcatgttttgtcttatttatatccttatgtaagaaatgtccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
26724694 |
T |
|
| Q |
97 |
atatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattaccaattgtcct |
196 |
Q |
| |
|
|||||||||| |||||||||||||||||| || ||| ||||||| | ||||||||||| |||| | ||||||||||| || |||||||| ||||||| |
|
|
| T |
26724693 |
atatcgtaaatattttaagcgaaatatttctttccccgtagtctg--gtaataatatgttttagtcacgaaaagtcttatgcagaattaccatttgtcct |
26724596 |
T |
|
| Q |
197 |
tcc |
199 |
Q |
| |
|
||| |
|
|
| T |
26724595 |
tcc |
26724593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 28146651 - 28146837
Alignment:
| Q |
20 |
ttgtcttatttatatccttagg---aaatgcccaaaatgcccttttct-acactcttcttcaaactaaaatatccgataaaatatcgtaaaagttttaag |
115 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28146651 |
ttgtcttatttgtatccttaggttgaaatgaccaaaatgccctttttttacactctttttcaaactagaatatccgataaaatatcgtaaaagttttaag |
28146750 |
T |
|
| Q |
116 |
cgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattacca-attgtccttccct |
201 |
Q |
| |
|
| |||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
28146751 |
caaaatatttcattccccatagtccgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattttgtccttccct |
28146837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 5248326 - 5248264
Alignment:
| Q |
56 |
cccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaaagttttaagcga |
118 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||| |||| |
|
|
| T |
5248326 |
cccttttctacatttttcttcaaactaaaatatccggtaaaatgtcgtaaaagatttatgcga |
5248264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 19804151 - 19804339
Alignment:
| Q |
4 |
gtagaaatttcatgttttgtcttatttatatccttagg----aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaaata |
99 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19804151 |
gtagaaatttcatgttttgtcttatttgtatccttaggtaagaaatgacaaaaatgcccttttctacactcttcttcaaactagaatatccgataaaata |
19804250 |
T |
|
| Q |
100 |
tcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattacca |
188 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
19804251 |
tcgtaaaagttttaagcgaaatacttcattccccatagtccgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattacca |
19804339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 4343043 - 4343114
Alignment:
| Q |
59 |
ttttctacactcttcttcaaactaaaatatccgataaaa-tatcgtaaaagttttaagcgaaatatttcatt |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | | | ||||||||||||| |||||||||| |
|
|
| T |
4343043 |
ttttctacactcttcttcaaaccaaaatatccgataaaaatgttgcgtaagttttaagcgagatatttcatt |
4343114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 12550 - 12359
Alignment:
| Q |
1 |
agtgtagaaatttcatgttttgtcttatttatatccttagg----aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12550 |
agtgtagaaatttcatgttttgtcttatttgtatccttaggtaagaaataactaaaatgcccttttctacactcttcttcaaactagaatatccgataaa |
12451 |
T |
|
| Q |
97 |
atatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattacca |
188 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
12450 |
atatcgtaaaagttttaagcgaaatacttcattccccataatccgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattacca |
12359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 14529276 - 14529080
Alignment:
| Q |
1 |
agtgtagaaatttcatgttttgtcttatttatatccttagg----aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14529276 |
agtgtagaaatttcatgttttgtcttatttgtatccttaggtaagaaatgaccaaaatgcccttttctacactcttcttcaaactagaatatccgataaa |
14529177 |
T |
|
| Q |
97 |
atatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaattacca-attgtcc |
195 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
14529176 |
atatcgtaaaagttttaagtgaaatatttcattccccatagtccg---------tatgtttcagtcctgaaaagtcttatgcacaattaccattttgtcc |
14529086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 19357614 - 19357568
Alignment:
| Q |
71 |
ttcttcaaactaaaatatccgataaaatatcgtaaaagttttaagcg |
117 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||||||||||||||| |
|
|
| T |
19357614 |
ttcttcaaactaaaatatccaattaaatgtcgtaaaagttttaagcg |
19357568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 2694408 - 2694275
Alignment:
| Q |
54 |
tgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatat |
153 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||||||||| |||| |||||||||||||||||| | ||| |||| | ||||||||||| ||||||| |
|
|
| T |
2694408 |
tgcccttttc-atactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtctgttggaataatat |
2694310 |
T |
|
| Q |
154 |
gtttcagtcccaaaaagtcttattcacaattacca |
188 |
Q |
| |
|
| ||| |||| |||||| || | |||||||||| |
|
|
| T |
2694309 |
gattcggtcctgaaaagttttgtgaacaattacca |
2694275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 5559564 - 5559672
Alignment:
| Q |
54 |
tgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatat |
153 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||||||||| |||| |||||||||||||||||| | ||| |||| | |||||| ||||| ||||||| |
|
|
| T |
5559564 |
tgcccttttc-atactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtccgttgaaataatat |
5559662 |
T |
|
| Q |
154 |
gtttcagtcc |
163 |
Q |
| |
|
| ||| |||| |
|
|
| T |
5559663 |
gattcggtcc |
5559672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 41530199 - 41530261
Alignment:
| Q |
54 |
tgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaaagttttaagcg |
117 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
41530199 |
tgcccttttc-atactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcg |
41530261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 37366868 - 37366757
Alignment:
| Q |
42 |
aaatgcccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaaagttttaagcgaaatatttcatttcccatagtctg |
141 |
Q |
| |
|
|||||||||| |||||||||| | || ||||||||||||||||||||||| |||| ||||||||||| |||||| || ||| |||| | |||||| | |
|
|
| T |
37366868 |
aaatgcccaatttgcccttttc-atgctattcttcaaactaaaatatccgattaaatgtcgtaaaagttctaagcggaaaattccattctcaatagtccg |
37366770 |
T |
|
| Q |
142 |
ttgagataatatg |
154 |
Q |
| |
|
||| |||||||| |
|
|
| T |
37366769 |
ttggaataatatg |
37366757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 23880260 - 23880158
Alignment:
| Q |
86 |
tatccgataaaatatcgtaaaagttttaagcgaaatatttcatttcccatagtctgttgagataatatgtttcagtcccaaaaagtcttattcacaatta |
185 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||||||| | | ||||| ||||| |||||||| | | || | ||||||||||| || ||||| |
|
|
| T |
23880260 |
tatctgataaaatgccgtaaaagttttaagcgagatatttcattcctcgtagtccgttgaaataatatgatacggttcttaaaagtcttatgcaaaatta |
23880161 |
T |
|
| Q |
186 |
cca |
188 |
Q |
| |
|
||| |
|
|
| T |
23880160 |
cca |
23880158 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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