View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11250_low_3 (Length: 390)
Name: NF11250_low_3
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11250_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 4004860 - 4005048
Alignment:
| Q |
20 |
tccaccaccacagcactattgctcctcttcactatctacttctattgtattctaatttctatgtatgtttgccatgatttggttgaaacatcaaagtgta |
119 |
Q |
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| T |
4004860 |
tccaccaccacagcactattgctcctcttcactatctacttctattgcattctcatttctatgtatgtttgccatgatttggttgaaacttcaaagtgta |
4004959 |
T |
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| Q |
120 |
atttttgcaaaattatgatagctcgttgtacttccatagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
208 |
Q |
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| T |
4004960 |
atttttgcaaaattatgatagctccttgtgcttccatagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
4005048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 374
Target Start/End: Original strand, 4006151 - 4006286
Alignment:
| Q |
241 |
ctatcacattaaaaaattatcaacatatttgttttcccgtcagttataaacatattgaaattaatacaatcacatacacacaaaac-agt--nnnnnnnn |
337 |
Q |
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| T |
4006151 |
ctatcacattaaaaaattatcaacatatttgttttcc-gtcagttataaacatattgaaattagtacaatcatatacacacaaaacaagtaaaaaaaaaa |
4006249 |
T |
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| Q |
338 |
nctgcattcaaacatgacctgctcgaattcctacaca |
374 |
Q |
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| T |
4006250 |
actgcattcaaacatgacctgctcgaattcctacaca |
4006286 |
T |
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