View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11250_low_6 (Length: 311)
Name: NF11250_low_6
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11250_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 46225720 - 46226006
Alignment:
| Q |
17 |
aaatgaaagcttccaaattaaaatgtttgttgactcaatttctaagaatatcaatgaatataatcccacctgataatccacaccaattgttgtaacaggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46225720 |
aaatgaaagcttccaaattaaaatgtttgttgactcaatttctaagaatatcaatgaatataatcccacctgataatccacaccaattgttgtaacaggt |
46225819 |
T |
|
| Q |
117 |
taagaaaatcccaagaagataagtggagactacatggaactactgcaatcttccagcttaattatcaaaagcctacgaacatgctcatgttaataatgct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46225820 |
taagaaaatcccaagaagataagtggagactacatggaactactgcaatcttccagtttaattatcaaaagcctacgaacatgctcatgttaataatgct |
46225919 |
T |
|
| Q |
217 |
ttctttcctattgtatgagctagtnnnnnnnttccctaacatattacctttagaaaactatcaaattcacgatttatggtctctgctt |
304 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46225920 |
ttctttcctattgtatgagctagt-aaaaaattccctaacatattacctttagaaaactatcaaattcacgatttatggtctctgctt |
46226006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 24167619 - 24167444
Alignment:
| Q |
17 |
aaatgaaagctt-ccaaattaaaatgtttgttgactcaatttctaagaatatcaatgaatataatcccacctgataatccacaccaattgttgtaacagg |
115 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24167619 |
aaatgaaagctttccatattaaaatgtttgttgactcaatttctaagaatatcaatgaatataatcccacctgataatccacaccaattgttgtaacaag |
24167520 |
T |
|
| Q |
116 |
t-taagaaaatcccaagaagataagtggagactacatggaactactgcaatcttccagcttaattatcaaaagcctac |
192 |
Q |
| |
|
| || ||||||| |||||||||||| || ||||| | | ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24167519 |
taaaaaaaaatcctaagaagataagt--agtctacaagaagctactgcaatcttccagtttaattatcaaaagcctac |
24167444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 27756724 - 27756591
Alignment:
| Q |
37 |
aaatgtttgttgactcaa-tttctaagaatatcaatgaatataatcccacctgataatccacaccaattgttgtaacaggttaagaaaatcccaagaaga |
135 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||| || | ||||||| ||||||| |
|
|
| T |
27756724 |
aaatgtttgttgacacaaatttctaagaatctcaatgagtataatcctacctgataatccacaccagttgttgtaacaagtcgaaaaaatcctaagaaga |
27756625 |
T |
|
| Q |
136 |
taagtggagactacatggaactactgcaatcttcca |
171 |
Q |
| |
|
|||||| ||||| ||| ||||| |||| ||||||| |
|
|
| T |
27756624 |
taagtg--gactagatgaaactattgcagtcttcca |
27756591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 27756468 - 27756402
Alignment:
| Q |
174 |
ttaattatcaaaagcctacgaacatgctcatgttaataatgctttctttcctattgtatgagctagt |
240 |
Q |
| |
|
|||||| ||||||||||| | |||| ||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27756468 |
ttaattttcaaaagcctaacagcatgttcatgttaataatgcttctttgcctattgtatgagctagt |
27756402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University