View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11250_low_7 (Length: 308)
Name: NF11250_low_7
Description: NF11250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11250_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 34859818 - 34859531
Alignment:
| Q |
1 |
gaaacaagcataacacaacacaactaagagaccaaaacatactacatttatgaattaactaaccatgaacccaaatctacgatttccaagattttctgca |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859818 |
gaaacaagcataacacaacacaactaagagactaaaacatactacatttatgaattaactaaccatgaacccaaatctacgatttccaagattttctgca |
34859719 |
T |
|
| Q |
101 |
ctagttggaaggagtgaaccctggctaactttgagagaattcatgatttctgtagatgaatttagaactggagctgagaagtacagatacacctttagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859718 |
ctagttggaaggagtgaaccctggctaactttgagagaattcatgatttctgtagatgaatttagaactggagctgagaagtacagatacacctttagct |
34859619 |
T |
|
| Q |
201 |
tgttatgatcattagttgcctgtactgttctagtttcactgttaatttgaagtagcttttcgggtacatgagtcctgatgttgacata |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34859618 |
tgttatgatcattagttgcctgtactgttctagtttcactgttaatttgaactagcttttcgggtacatgagtcctgatgttgacata |
34859531 |
T |
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