View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11251_high_3 (Length: 513)
Name: NF11251_high_3
Description: NF11251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11251_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 21580455 - 21580242
Alignment:
| Q |
16 |
atgaacatttatcatgttgaagtatccaaacaatatttcactaccaaaatcataacatttatcatgtttttggtaagttttaagatgtttacaacatatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21580455 |
atgaacatttatcatgttgaagtatccaaacaatatttcactaccaaaatcataacatttatcatgtttttggtaagttttaagatgtttacaacatatt |
21580356 |
T |
|
| Q |
116 |
ttcatggtattattttcaaacaatgatatttagctaagtcggactggtctatctctatgctccatgtttatcataatggaattgatgtgctgatttttaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
21580355 |
ttcatggtattattttcaaacaatgatatttagctaaatcggattggtctatctctatgctccatgtttatcacaatggaattgatgtgctgattttcaa |
21580256 |
T |
|
| Q |
216 |
ctaagttggtcctc |
229 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21580255 |
ctaagttggtcctc |
21580242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 242 - 474
Target Start/End: Complemental strand, 21579892 - 21579659
Alignment:
| Q |
242 |
gtttgattttatttgaagataacgatgagagttgtcttcccatttagtgtgcagttttgtttaatgttttgtcttgtttcccatttatcaaaacaataat |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
21579892 |
gtttgattttatttgaagataacgatgagagttgtcttctcatttagtgtgtagttttgtttgatgttttgtcttatttctcatttattaaaacaataat |
21579793 |
T |
|
| Q |
342 |
gtttcgtggacacacnnnnnnnnn-agtacacatgcacgacaccaagttaatcacatatacaattgtagttaactcatttaaatagatgataaattaaat |
440 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21579792 |
gttttatggacacacatttttttttactacacatgcacgacaccaagttaatcacatatacaattgtaattaactcatttaaatagatgataaattaaat |
21579693 |
T |
|
| Q |
441 |
gattaactataatatttaacttgatctaaattaa |
474 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
21579692 |
gattaactataatatttaacgtgatctaaattaa |
21579659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University