View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11251_high_7 (Length: 287)
Name: NF11251_high_7
Description: NF11251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11251_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 37107200 - 37107096
Alignment:
| Q |
6 |
agcagcacagagtatggttacatcaataacaactattttaattttgggtggaaagagcgagcggtaatggccaacgttgaagtgttttctttgttagatt |
105 |
Q |
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| T |
37107200 |
agcaccacggagtatggttacatcaataacaactattttaattttgggtggaaagagcgagcggtaatggccaacgttgaagtgttttctttgttggatt |
37107101 |
T |
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| Q |
106 |
tcttt |
110 |
Q |
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||||| |
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| T |
37107100 |
tcttt |
37107096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 37105839 - 37105795
Alignment:
| Q |
227 |
ctacttctttacctttttcttttatcttaacacgtgtttttcatg |
271 |
Q |
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| T |
37105839 |
ctacttctttacctttttcttttatcttaacacgtgtttttcatg |
37105795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 37107021 - 37106991
Alignment:
| Q |
188 |
gtaagtacaacggcacacacgatccaccaac |
218 |
Q |
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| T |
37107021 |
gtaagtacaacggcacacacgatccaccaac |
37106991 |
T |
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