View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11251_low_12 (Length: 202)
Name: NF11251_low_12
Description: NF11251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11251_low_12 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 105825 - 105653
Alignment:
| Q |
14 |
gagatgaaattctctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105825 |
gagatgaaattctctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcat |
105726 |
T |
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| Q |
114 |
gctcaacaacaatgtccgcaaaaaactcagtgggattgagtagctgaaaataaataataaaggtaattagttt |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105725 |
gctcaacaacaatgtccgcaaaaaactcagtgggattgagtagctgaaaataaataataaaggtaattagttt |
105653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 166362 - 166190
Alignment:
| Q |
14 |
gagatgaaattctctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| || ||| ||||||||||||||||||||| |
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| T |
166362 |
gagatgaaattctctatctctttcttcctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcat |
166263 |
T |
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| Q |
114 |
gctcaacaacaatgtccgcaaaaaactcagtgggattgagtagctgaaaataaataataaaggtaattagttt |
186 |
Q |
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| T |
166262 |
gttcaactacaatgtccacaaaaaattctgtgggattgagtacctgaaaataaataacaaagctaatcagttt |
166190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 13054299 - 13054130
Alignment:
| Q |
17 |
atgaaattctctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcatgct |
116 |
Q |
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| T |
13054299 |
atgaaattctctatctcgttcttcctatgctctggatatagcttattgaacataactaaagcttgaattgccggtccagtgcactcaacatactcatatt |
13054200 |
T |
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| Q |
117 |
caacaacaatgtccgcaaaaaactcagtgggattgagtagctgaaaataaataataaaggtaattagttt |
186 |
Q |
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| T |
13054199 |
caattacaatgtctgcgaaaaattcagtgggattcagtacctgcaaataaataacaaaggtaattagttt |
13054130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 12136081 - 12136237
Alignment:
| Q |
26 |
tctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcatgctcaacaacaa |
125 |
Q |
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| T |
12136081 |
tctatctctttcttcctatgctctggatataatttcttgaacaaaactaaagcttgaattgccgatccagtgcaatcaacatattcatgctcgaccacga |
12136180 |
T |
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| Q |
126 |
tgtccgcaaaaaactcagtgggattgagtagctgaaaataaataataaaggtaatta |
182 |
Q |
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| T |
12136181 |
tatcagcaataaactctgcaggattgagtaactaaaaatcaataataaagttaatta |
12136237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 90958 - 91119
Alignment:
| Q |
26 |
tctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcatgctcaacaacaa |
125 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||| |||| || | |
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| T |
90958 |
tctatctcgttcttcctatgccctggatatagcttcttgaacaaaactaaagcttcaatcgttgttccagtgcactcaacatattcatgttcaattacca |
91057 |
T |
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| Q |
126 |
tgtccgcaaaaaactcagtgggattgagtagct-gaaaataaataataaaggtaattagttt |
186 |
Q |
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| T |
91058 |
tgtcctcgaaaagttctgtgggatttagtagctggaaaataaacaagaaagctaattagttt |
91119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 5653030 - 5653113
Alignment:
| Q |
48 |
ctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcatgctcaacaacaatgtccg |
131 |
Q |
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| T |
5653030 |
ctggatatagcttcttaaacaaaactaaggcttgaattgctgatccagtgcattcaacatattcatgctcaacaacaatgtccg |
5653113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 5687616 - 5687769
Alignment:
| Q |
17 |
atgaaattctctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcatgct |
116 |
Q |
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||||||||||||| |||| ||| |||||| | ||||||| || || |||||||| | ||||||||| | |||| |||||| |||||||||||| ||| |
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| T |
5687616 |
atgaaattctctacttcttcctttctatgctcgggatataattttttaaacaaaaccatagcttgaatcgatgatgaagtgcattcaacatattcacgct |
5687715 |
T |
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| Q |
117 |
caacaacaatgtccgcaaaaaactcagtgggattgagtagctgaaaataaataa |
170 |
Q |
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| T |
5687716 |
caactacaatttcctcaagaaattcaattggattgagtagctgaaaattaataa |
5687769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 5666546 - 5666699
Alignment:
| Q |
17 |
atgaaattctctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcatgct |
116 |
Q |
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||||||||||||| |||| ||| |||||| | ||||||| || || |||||||| | ||||||||||| |||| |||||| |||||||||||| ||| |
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| T |
5666546 |
atgaaattctctacttcttcctttctatgctcgggatatatttttttaaacaaaaccatagcttgaattgatgatgaagtgcattcaacatattcacgct |
5666645 |
T |
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| Q |
117 |
caacaacaatgtccgcaaaaaactcagtgggattgagtagctgaaaataaataa |
170 |
Q |
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|||| ||||| ||| | | ||| || | ||||||||||||||||||| ||||| |
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| T |
5666646 |
caactacaatttcctcgagaaattctattggattgagtagctgaaaattaataa |
5666699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 5719732 - 5719879
Alignment:
| Q |
17 |
atgaaattctctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcatgct |
116 |
Q |
| |
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||||||||||||| |||| ||| |||||| | ||||||| || || |||||||| | ||||||||||| |||| |||||| |||||||||||| ||| |
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| T |
5719732 |
atgaaattctctacttcttcctttctatgctcgggatatatttttttaaacaaaaccatagcttgaattgatgatgaagtgcattcaacatattcacgct |
5719831 |
T |
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| Q |
117 |
caacaacaatgtccgcaaaaaactcagtgggattgagtagctgaaaat |
164 |
Q |
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| T |
5719832 |
caactacattttcctcaagaaattctattggattgagtagctgaaaat |
5719879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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