View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11251_low_2 (Length: 545)
Name: NF11251_low_2
Description: NF11251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11251_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 22275104 - 22274802
Alignment:
| Q |
1 |
tggatgtaaccaactcttaactactataacaaaataggaaatagctatcacattaactttactagttactagcatagacattcactaactatataatttg |
100 |
Q |
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| T |
22275104 |
tggatgtaactaactcttaactactaaaacaaaataggaaatagctatcacattaactttactagttactagcatagacattcactaactatataatttg |
22275005 |
T |
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| Q |
101 |
ttgatccacaagctttcatacatacatctttgaaataggttaatcttccacacattttgcaattttggtgataaattaataatatagtttgtagctgatt |
200 |
Q |
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| T |
22275004 |
ttgatccacaagctttcatacatacatctttgaaataggttagtcttccacacattttgcaattttggtga-aaattgataatatagtttgtagctgatt |
22274906 |
T |
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| Q |
201 |
ccattgatctactcaatttaaaagctagattgaaacctgatagtcaaatgtttattgggatatttgctgcatgtagtatactagcagatcgtgaaatgga |
300 |
Q |
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| T |
22274905 |
ccattgatctactcaatttaaaagctagattgaaacttgatagtcaaatgtttattgggatatttgctgcatgtagtatgctagcagatcgagaaatgga |
22274806 |
T |
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| Q |
301 |
gtat |
304 |
Q |
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|||| |
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| T |
22274805 |
gtat |
22274802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 336 - 524
Target Start/End: Complemental strand, 22274804 - 22274620
Alignment:
| Q |
336 |
tatattttaccaattatgtctgcattttattcttatagtggacatgatgatatgtactgtggcgcatctttatgaagcctttaaattaattgaaagatgt |
435 |
Q |
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| T |
22274804 |
tatattttaccaattatgtc-gcattttgttcttatagtggacatgat---atgtattgtggcgcatctttatgaagcctttaaattcattgaaagatgt |
22274709 |
T |
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| Q |
436 |
cataaaacatcgtgacaatgcatgagaacatagataaatcattacaaaatatcttgaaacaacaagaaatgaagatgttgtgctagact |
524 |
Q |
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| T |
22274708 |
cataaaacttggtatcaatgcatgagaacatagacaaatcattacaaaataccttgaaacaacaagaaatgaagatgttgtgctagact |
22274620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 22267222 - 22267139
Alignment:
| Q |
197 |
gattccattgatctactcaatttaaaagct-agattgaaacctgatagtcaaatgtttattgggatatttgctgcatgtagtat |
279 |
Q |
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|||||| |||||||||||| || |||| | |||||||||||| ||| ||||||||||||| ||||||||| || || |||||| |
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| T |
22267222 |
gattcctttgatctactcatttaaaaatttgagattgaaacctaataatcaaatgtttattcggatatttgttgtatttagtat |
22267139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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