View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11251_low_4 (Length: 431)
Name: NF11251_low_4
Description: NF11251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11251_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 3533075 - 3532678
Alignment:
| Q |
1 |
tgtttgcaccaaataagcttttcttggcatttgcgatgccttacggtacaagattggctattattttttgcaagacaattgcaatgtcaaatagaacatc |
100 |
Q |
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| T |
3533075 |
tgtttgcaccaaataagcttttcttggcatttgcgatgccttacggtacaagattggctattattgtttgcaagacaattgcaatgtcaaatagaacatc |
3532976 |
T |
|
| Q |
101 |
gtagagggaaagcatttcctcattcaagccaattctagtggcatccatatatatgttatacgccttgaccggtcaagagtaatcttcaatcaacacttct |
200 |
Q |
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| T |
3532975 |
gaagagggaaagcatttcctcattcaagccaattctagtgacatccatatatatgttatacgccttgaccggtcaagagtaattttcaatcaacacttct |
3532876 |
T |
|
| Q |
201 |
tgcctcgacactccatctatttcttggcccttattcgacagaagggctatgtgatggtcaccaacagaagtgtcatcaacagaagcgtggtatcgaccaa |
300 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3532875 |
tgcctcgacactccatc--------------tattcgacagaa-ggctatgtgatggtcaccaacagaagtgtcatcaacagaagcgtggtatcgaccga |
3532791 |
T |
|
| Q |
301 |
tggttgctacgtatactacttgtgagctttcttggtcaatatatttgttaaatggttttacatgtactagtaccacatctcgggctggcaagattgtttt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
3532790 |
tggttgctacgtatactacttgtgagctttcttggtcaagatatttgttaaa-ggttttacatgtaccagtaccacatcccgggctggcaagattgtttt |
3532692 |
T |
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