View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11251_low_5 (Length: 427)
Name: NF11251_low_5
Description: NF11251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11251_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 17432070 - 17432467
Alignment:
| Q |
18 |
gttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactcatttggaacaata |
117 |
Q |
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| T |
17432070 |
gttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactcatttggaacaata |
17432169 |
T |
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| Q |
118 |
tttgtagtcgatgaccctattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctcttgatggttcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17432170 |
tttgtagtcgatgaccctattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctcttgatggttcaa |
17432269 |
T |
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| Q |
218 |
atgtgagcatagttttgtcacttgtgttcaacaatgggcaatatagtggtagcactttggagattcaaggtgctagtcgacaacgcgaaaattcaagaga |
317 |
Q |
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| T |
17432270 |
atgtgagcatagttttgtcacttgtgttcaacaatgggcaatatagtggtagcactttggagattcaaggtgctagtcgacaacgcgaaaattcaagaga |
17432369 |
T |
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| Q |
318 |
gctttctgttgtttccggaacaggaaggtttcgatatgcaagaggatttgttgtgtttgaaactgtatcttacgatgattcaactaatcattctgttc |
415 |
Q |
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| T |
17432370 |
gctttctgttgtttccggaacaggaaggtttcgatatgcaagaggatttgttgtgtttgaaactgtatcttatgatgattcaactaatcattctgttc |
17432467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 17435943 - 17436319
Alignment:
| Q |
18 |
gttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactcatttggaacaata |
117 |
Q |
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||||| |||||||||||| |||| |||| | |||||||||| || |||||||||||||| |||| ||||||||| ||| ||||||| ||||||||| |
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| T |
17435943 |
gttctacctacaagatgtgggaagaggattcaacgcaaccgttatgccggttatcggcatcaacggaagggtttggtcttaccactcattcggaacaata |
17436042 |
T |
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| Q |
118 |
tttgtagtcgatgaccctattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctcttgatggttcaa |
217 |
Q |
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||||| || |||||||| | ||||||| ||||| |||| |||||||||||| |||||||| |||||| | |||||||| |||||||| |||||| ||| |
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| T |
17436043 |
tttgtcgttgatgaccccgtcatgttaagccctagtccattttcaactcaaattggaagggcacaaggtgtaattacagtgacatctctagatggtgcaa |
17436142 |
T |
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| Q |
218 |
atgtgagcatagttttgtcacttgtgttcaacaatgggcaatatagtggtagcactttggagattcaaggtgctagtcgacaacgcgaaaattcaagaga |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||| || ||||||||||| |
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| T |
17436143 |
atgtgaacatagttttgtcacttgtgttcaacaatggggaatatagtggtagcactttggagatacaaggtaatagtcgtcaacgtgagaattcaagaga |
17436242 |
T |
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| Q |
318 |
gctttctgttgtttccggaacaggaaggtttcgatatgcaagaggatttgttgtgtttgaaactgtatcttacgatg |
394 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |||| |
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| T |
17436243 |
gctctctgttgtttctggaacaggaaggtttcgatatgcaagagggtttgttgtgtttgaaactatgtcttatgatg |
17436319 |
T |
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