View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11251_low_6 (Length: 409)

Name: NF11251_low_6
Description: NF11251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11251_low_6
NF11251_low_6
[»] chr2 (4 HSPs)
chr2 (250-393)||(18929745-18929887)
chr2 (246-387)||(17403237-17403377)
chr2 (278-393)||(25519999-25520113)
chr2 (343-393)||(26651350-26651400)
[»] chr3 (8 HSPs)
chr3 (245-393)||(9033046-9033195)
chr3 (246-387)||(4770168-4770307)
chr3 (275-393)||(4765286-4765403)
chr3 (343-393)||(15687370-15687420)
chr3 (345-387)||(16242605-16242647)
chr3 (343-393)||(29614037-29614087)
chr3 (343-393)||(13428406-13428456)
chr3 (356-393)||(4832190-4832227)
[»] chr6 (4 HSPs)
chr6 (246-393)||(17525299-17525444)
chr6 (276-393)||(31125745-31125861)
chr6 (249-387)||(22394009-22394143)
chr6 (343-393)||(16177706-16177759)
[»] chr8 (5 HSPs)
chr8 (231-393)||(28371544-28371705)
chr8 (342-393)||(23539981-23540032)
chr8 (345-393)||(10662139-10662187)
chr8 (246-386)||(22713164-22713303)
chr8 (311-387)||(24092825-24092900)
[»] scaffold0002 (1 HSPs)
scaffold0002 (246-393)||(373696-373841)
[»] chr5 (9 HSPs)
chr5 (273-386)||(20064063-20064173)
chr5 (342-393)||(25951732-25951783)
chr5 (343-387)||(19217727-19217771)
chr5 (312-387)||(17987914-17987988)
chr5 (343-382)||(20058300-20058339)
chr5 (342-393)||(21165604-21165655)
chr5 (340-385)||(23209772-23209817)
chr5 (316-393)||(24878813-24878889)
chr5 (312-387)||(22011515-22011588)
[»] chr1 (3 HSPs)
chr1 (231-393)||(22619579-22619739)
chr1 (343-387)||(11013493-11013537)
chr1 (346-387)||(20146645-20146686)
[»] chr7 (3 HSPs)
chr7 (330-387)||(2545807-2545864)
chr7 (343-393)||(4173104-4173154)
chr7 (341-377)||(2563197-2563233)
[»] chr4 (2 HSPs)
chr4 (342-393)||(11362109-11362160)
chr4 (309-387)||(10071001-10071078)
[»] scaffold0795 (1 HSPs)
scaffold0795 (343-387)||(5725-5769)
[»] scaffold0555 (1 HSPs)
scaffold0555 (350-393)||(5337-5380)
[»] scaffold0161 (1 HSPs)
scaffold0161 (350-393)||(5345-5388)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 393
Target Start/End: Complemental strand, 18929887 - 18929745
Alignment:
Q  250 atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  18929887 atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc 18929789  T
Q  350 tggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    |||||||||||||| |||||||||||||||| |||||| |||||    
T  18929788 tggtattttcaccaacctcatttaatgtggtgaacattagttga 18929745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 246 - 387
Target Start/End: Complemental strand, 17403377 - 17403237
Alignment:
Q  246 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 345  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||  ||||| | ||  || ||  ||| |||||||||||| ||   ||| ||||| |    
T  17403377 tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt 17403279  T
Q  346 tagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  17403278 tagctggtaattttaccagcctcatttaatgtggtcaacatt 17403237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 393
Target Start/End: Original strand, 25519999 - 25520113
Alignment:
Q  278 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 377  Q
    ||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  ||||||||     
T  25519999 tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc 25520097  T
Q  378 ggtcaacattggttga 393  Q
     ||||||||| |||||    
T  25520098 agtcaacattagttga 25520113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 26651400 - 26651350
Alignment:
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| |||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttga 26651350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 245 - 393
Target Start/End: Original strand, 9033046 - 9033195
Alignment:
Q  245 gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt 342  Q
    |||||||||||||||| |||||||    ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  ||||    
T  9033046 gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt 9033144  T
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttga 9033195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 387
Target Start/End: Complemental strand, 4770307 - 4770168
Alignment:
Q  246 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 345  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||    
T  4770307 tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttc-aggggggtaaattgt 4770210  T
Q  346 tagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    ||||||||| ||| | ||| ||| |||||||||| |||||||    
T  4770209 tagctggtaattttaacagactcgtttaatgtggccaacatt 4770168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 275 - 393
Target Start/End: Original strand, 4765286 - 4765403
Alignment:
Q  275 ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 374  Q
    |||||||||||  ||||||||||| |  | | | ||| |||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||    
T  4765286 ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa 4765384  T
Q  375 tgtggtcaacattggttga 393  Q
    |||| |||||||| |||||    
T  4765385 tgtgatcaacattagttga 4765403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 15687420 - 15687370
Alignment:
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttga 15687370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 16242605 - 16242647
Alignment:
Q  345 ttagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacatt 16242647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 29614037 - 29614087
Alignment:
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| |||||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttga 29614087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 13428406 - 13428456
Alignment:
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| |||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttga 13428456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 4832190 - 4832227
Alignment:
Q  356 tttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttga 4832227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 246 - 393
Target Start/End: Complemental strand, 17525444 - 17525299
Alignment:
Q  246 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 345  Q
    |||||||||||||| |||||||||| ||||| ||||||||    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  17525444 tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt 17525347  T
Q  346 tagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  17525346 tagctggtaatttcaccagtctcatttaatgtggtcaacattagttga 17525299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 393
Target Start/End: Original strand, 31125745 - 31125861
Alignment:
Q  276 tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 375  Q
    ||||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||    
T  31125745 tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat 31125843  T
Q  376 gtggtcaacattggttga 393  Q
    |||||||||||| |||||    
T  31125844 gtggtcaacattagttga 31125861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 387
Target Start/End: Original strand, 22394009 - 22394143
Alignment:
Q  249 catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag 348  Q
    ||||||||| || ||||||||| |||| |||||||||  ||||| ||||| |  | || |||  |||||||||| ||||| |||||||||||| ||||||    
T  22394009 catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag 22394106  T
Q  349 ctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
     ||||| ||||||||||||  ||||||||||||||||||    
T  22394107 ttggtaatttcaccagcct--tttaatgtggtcaacatt 22394143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 16177759 - 16177706
Alignment:
Q  343 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttga 393  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| |||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttga 16177706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 393
Target Start/End: Complemental strand, 28371705 - 28371544
Alignment:
Q  231 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 330  Q
    |||||||||| |  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |    
T  28371705 aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattt-t 28371607  T
Q  331 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    | || ||||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| |||||    
T  28371606 ttggtggcaatttgttagttggtattttcactagcataatttaatgtggccaatattagttga 28371544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 23539981 - 23540032
Alignment:
Q  342 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| |||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttga 23540032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 10662187 - 10662139
Alignment:
Q  345 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||| || ||||||||| |||||||||||||||||||||| |||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttga 10662139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 386
Target Start/End: Original strand, 22713164 - 22713303
Alignment:
Q  246 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 345  Q
    |||| |||||||||||||||||||| ||||| ||||||||  ||||  ||| | ||||  || ||| |||||||||| ||||| |  |||||||||||||    
T  22713164 tgacgtcatgctttgaaatacttagagtttt-tcaaaaattccaatattcttctttgaaaattttcagtcgaaaatgacatttttgtgggggcaatttgt 22713262  T
Q  346 tagctggtattttcaccagcctcatttaatgtggtcaacat 386  Q
     |||  ||| ||| | ||| ||| |||||||  ||||||||    
T  22713263 aagcctgtagttttaacaggctcgtttaatgcagtcaacat 22713303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 24092825 - 24092900
Alignment:
Q  311 ccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    ||||||||||||| |||| |||||||||| |||| ||||  ||| ||||  ||| ||||||||||||||| ||||||    
T  24092825 ccgtcgaaaatggtattt-ttggggggcagtttgatagcctgtaatttcgacaggctcatttaatgtggttaacatt 24092900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 393
Target Start/End: Original strand, 373696 - 373841
Alignment:
Q  246 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 345  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |  |  |  ||  |||||||||||| ||| ||||||||||||||||    
T  373696 tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt 373793  T
Q  346 tagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||| ||||  ||| |||| ||||||||||||||||||||||| |||||    
T  373794 tagttggttattttaccaacctcatttaatgtggtcaacattagttga 373841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 386
Target Start/End: Original strand, 20064063 - 20064173
Alignment:
Q  273 ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt 372  Q
    ||||| ||||||||||||| |||||| |||| ||   ||  ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||    
T  20064063 ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt 20064159  T
Q  373 aatgtggtcaacat 386  Q
    ||||||||||||||    
T  20064160 aatgtggtcaacat 20064173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 25951783 - 25951732
Alignment:
Q  342 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttga 25951732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 387
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  312 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 20058300 - 20058339
Alignment:
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtca 382  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtca 20058339  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 21165655 - 21165604
Alignment:
Q  342 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| |||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttga 21165604  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 23209772 - 23209817
Alignment:
Q  340 atttgttagctggtattttcaccagcctcatttaatgtggtcaaca 385  Q
    |||| ||||||| ||||| ||||||||||| |||||||||||||||    
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaaca 23209817  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 393
Target Start/End: Complemental strand, 24878889 - 24878813
Alignment:
Q  316 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| |||||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttga 24878813  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 387
Target Start/End: Complemental strand, 22011588 - 22011515
Alignment:
Q  312 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    ||||||||||||||||| |  ||||||| ||||||||   ||| ||||| |||  |||||||||||||||||||||    
T  22011588 cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatt 22011515  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 393
Target Start/End: Original strand, 22619579 - 22619739
Alignment:
Q  231 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 330  Q
    |||||||||| | | ||||||||||||||||||||||||  ||||| |||||| |  ||||| ||||| | || | ||||| |||||||||| ||||| |    
T  22619579 aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t 22619676  T
Q  331 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    |||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| |||||    
T  22619677 tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttga 22619739  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 11013493 - 11013537
Alignment:
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacatt 11013537  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 20146686 - 20146645
Alignment:
Q  346 tagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    |||||||||| |||||||| |||||||||||||| |||||||    
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacatt 20146645  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 2545864 - 2545807
Alignment:
Q  330 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 2545807  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 4173104 - 4173154
Alignment:
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| |||||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttga 4173154  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  341 tttgttagctggtattttcaccagcctcatttaatgt 377  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 11362160 - 11362109
Alignment:
Q  342 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttga 11362109  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 387
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  309 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

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Target: scaffold0795 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 5725 - 5769
Alignment:
Q  343 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 387  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacatt 5769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 5337 - 5380
Alignment:
Q  350 tggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    |||||||||||||||||||||||| |||||||||| || |||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttga 5380  T

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Target: scaffold0161 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 393
Target Start/End: Complemental strand, 5388 - 5345
Alignment:
Q  350 tggtattttcaccagcctcatttaatgtggtcaacattggttga 393  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttga 5345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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