View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_high_1 (Length: 794)
Name: NF11252_high_1
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 9 - 779
Target Start/End: Original strand, 2120354 - 2121130
Alignment:
| Q |
9 |
agcagagagctgattgtcaaagacattataaattttgtcaccaccaggtcgcctgtagtaggttgacaaattacaaaccttagtttgagaaaatgaaaac |
108 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
2120354 |
agcagggagctgattgtcaaagacattataaattttatcaccaccaggtcgcctgtagtaggttgacaaattacagacgttagtttgagaaaatgaaaaa |
2120453 |
T |
|
| Q |
109 |
atccaaaggataattaagnnnnnnnngggatagagcaaaaagtcattttataaagaaataaggacagaaaaaggacacttacaccccatcaagatgttct |
208 |
Q |
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| T |
2120454 |
atccaaaggataattaagaaaaaaa-gggatagagcaaaaaatcattttataaagaaaaaagcacagaaaaaggacacttacaccccatcaaggtgttct |
2120552 |
T |
|
| Q |
209 |
ttaaatatttgatcaaatgtgcggcatatttccatgattgcatacaattttccctgcacgtgatttg-aatcaattattagaaaattcatgtgcacgatg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| | |||||||||||||| | ||| ||| |
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| T |
2120553 |
ttaaatatttgatcaaatgtgcggcatatttccatgattgcatacaattttccctgcacatgaattgtaatcagtcattagaaaattcatatacacaatg |
2120652 |
T |
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| Q |
308 |
cgataataagatccatgaaatgacgatcctatcgttgtaataaatcaatttgctgaaatgatgaatacttgcaagcttggaatggaaaacaaggcctctt |
407 |
Q |
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|| ||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| | || |
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| T |
2120653 |
tgaaaataagatccatgaaataacgatcctatcgctgtaataaatcagtttgcaaaaatgatgaatacttgcaagcttagaatggaaaacaaggcttttt |
2120752 |
T |
|
| Q |
408 |
tctaaagttaatccatataataataaaata--------ttgataattcaaagggagcttttggagagcaaaattaccccttcatcagctgcaataggctt |
499 |
Q |
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| T |
2120753 |
tctaaagttaatccatataataataaaatactttgaaattgataaatcaaagtaagcttttgaagagaaaaattaccccttcatcagctgcaataggctt |
2120852 |
T |
|
| Q |
500 |
tcccaaacgactcagttcagtttcaagttcagcgattgttttgctgataagtgactgaatgcctggaattttggacttgattactgcctccaaatgctga |
599 |
Q |
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| T |
2120853 |
tcccaaacgactcagttcggtttcaagatcagcaattgttttgctgataagtgattgaatgccgggaattttggacttgattactgcctccaaatgctga |
2120952 |
T |
|
| Q |
600 |
gatattaagtagtacggttctcagtcacagaaacaagtaacccaaaa-ttaatactagttaaaaattattaaaaactaatattccgtccaattgatgttt |
698 |
Q |
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| T |
2120953 |
tat-ttaagcagtacggt--tcagtcacagaaacaagtaacacaaaagtaaatactaattaaaaattattaaaaactaatattccgttcaaatgatgttc |
2121049 |
T |
|
| Q |
699 |
tatatgaataaattgttatttcaatacctttgaaagcatcttcgcaaggtgctcagaacccattctgtgagcaaggtgttt |
779 |
Q |
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| T |
2121050 |
tatatggataaatttttatttcaatacctttgaaagcatcttggcaaggtgctcagaacccattctgtgagcaaggtgttt |
2121130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 463 - 599
Target Start/End: Complemental strand, 42041555 - 42041419
Alignment:
| Q |
463 |
agagcaaaattaccccttcatcagctgcaataggctttcccaaacgactcagttcagtttcaagttcagcgattgttttgctgataagtgactgaatgcc |
562 |
Q |
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|||||||| ||||||| |||||||||||| ||||||||||| |||||||||||| ||||||| |||| ||||||||||| || || ||||||||||| |
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| T |
42041555 |
agagcaaacttaccccagcatcagctgcaacaggctttcccagacgactcagttcggtttcaatttcatttattgttttgctaatcagagactgaatgcc |
42041456 |
T |
|
| Q |
563 |
tggaattttggacttgattactgcctccaaatgctga |
599 |
Q |
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| T |
42041455 |
tggaatcttggacttgattactgtctccaaatgctga |
42041419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 42041868 - 42041779
Alignment:
| Q |
183 |
acacttacaccccatcaagatgttctttaaatatttgatcaaatgtgcggcatatttccatgattgcatacaattttccctgcacgtgat |
272 |
Q |
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| T |
42041868 |
acacatacacgccatccagatggtctttgaatatttgatcaaatgagcgacatatttccatgattgcatataacttgccctgcatgtgat |
42041779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 42042013 - 42041946
Alignment:
| Q |
9 |
agcagagagctgattgtcaaagacattataaattttgtcaccaccaggtcgcctgtagtaggttgaca |
76 |
Q |
| |
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| T |
42042013 |
agcagggagctggttgtcaaagacattataaattttatcacctccaggtcgcctgtaggagattgaca |
42041946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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