View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_high_13 (Length: 439)
Name: NF11252_high_13
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 22 - 432
Target Start/End: Complemental strand, 1328705 - 1328295
Alignment:
| Q |
22 |
gtgagctgtcacgaaaatcggacatgttgagaaggcgagtcccacgtcgagttgagaagaatatctcttgctcataagcagggtcaccttctgctagaag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1328705 |
gtgagctgtcacgaaaatcggacatgttgagaaggcgagtcccacgtcgagttgagaagaatatctcttgctcataagcagggtcaccttcttctagaag |
1328606 |
T |
|
| Q |
122 |
cctttgaatcaaaataagagttttcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328605 |
cctttgaatcaaaataagagttttcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcga |
1328506 |
T |
|
| Q |
222 |
gagtaacatgttaaactcagaatctcccgtatatatttctcttcagccggatattcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328505 |
gagtaacatgttaaactcagaatctcccgtatatatttctcttcagccggatattcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaa |
1328406 |
T |
|
| Q |
322 |
gtgaggtgctgcttcccaccattgctagtcctatgcttgtctgatcctttactgccccaaaggcttttcttaatgagtttggaggcatactttatttttg |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328405 |
gtgaggtgctgcttcccaccattgctagtcctatgcttgtctgatcctttactgccccaaaggcttttcttaatgagtttggaggcatactttatttttg |
1328306 |
T |
|
| Q |
422 |
ctcctatgctt |
432 |
Q |
| |
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||||||||||| |
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| T |
1328305 |
ctcctatgctt |
1328295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 396
Target Start/End: Complemental strand, 1924015 - 1923654
Alignment:
| Q |
35 |
aaaatcggacatgttgagaaggcgagtcccacgtcgagttgagaagaatatctcttgctcataagcagggtcaccttctgctagaagcctttgaatcaaa |
134 |
Q |
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|||||| |||||||| ||||| ||||| |||||| |||||||||||||||| ||||| ||||||||| | ||||| || || | | ||||||||||||| |
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| T |
1924015 |
aaaatcagacatgttaagaagtcgagttccacgttgagttgagaagaatatttcttgttcataagcacgatcaccatcagccaacaacctttgaatcaaa |
1923916 |
T |
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| Q |
135 |
ataagagttttcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgtta |
234 |
Q |
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| ||| ||||| ||||| ||||||||| | | |||||| | | ||| | ||||| || || ||||||| ||| |||||||| || ||||||||||||| |
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| T |
1923915 |
acaagtgtttttaaagcaactgtccaactgcttgtcttgatcaaacgtttagagagtgtgttcacacaagaacttatgaatgctcgtgagtaacatgtta |
1923816 |
T |
|
| Q |
235 |
aactcagaatctcccgtatatatttctcttcagccggatattcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgct |
334 |
Q |
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| || |||||||| | || | | | |||||||| |||| |||||| || | || ||||| ||||| ||||| | ||| ||| | | ||||| ||||| |
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| T |
1923815 |
agcttagaatctctctaatgtgtctttcttcagctggattttcatcatgttttgttgctttaacaatggctacttgaagatcacctattgaggcactgct |
1923716 |
T |
|
| Q |
335 |
tcccaccattgctagtcctatgcttgtctgatcctttactgccccaaaggcttttcttaatg |
396 |
Q |
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||| || |||||| ||||||||||| ||||| || ||||| |||| |||| ||||||||| |
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| T |
1923715 |
tccaacttttgctatgcctatgcttgtttgatctttcactgctccaatggctcttcttaatg |
1923654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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