View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11252_high_20 (Length: 321)

Name: NF11252_high_20
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11252_high_20
NF11252_high_20
[»] scaffold0775 (2 HSPs)
scaffold0775 (12-161)||(350-502)
scaffold0775 (215-265)||(246-296)


Alignment Details
Target: scaffold0775 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 502 - 350
Alignment:
Q  12 gagcacagagcaattgtatcaggccttgcgcgatgttagggagaggttggcacccgttttgaccggaaggcagcagcaggactagga---gaagtaggac 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  502 gagcacagagcagttgtatcaggccttgcgcgatgttagggagaggttggcacccgttttgaccggaaggcagcagcaggactaggagaagaagtaggac 403  T
Q  109 tagttgatgtgtaggacttgtttttagttttaatgttgagacatgagatagac 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  402 tagttgatgtgtaggacttgtttttagttttaatgttgagacatgagatagac 350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 296 - 246
Alignment:
Q  215 acgcatgtggtaactttaagagaaaatgtatcggttgaatctaatatttat 265  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  296 acgcatgtggtaactttaagagataatgtatcggttgaatctaatatttat 246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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