View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11252_high_25 (Length: 262)

Name: NF11252_high_25
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11252_high_25
NF11252_high_25
[»] scaffold0252 (1 HSPs)
scaffold0252 (17-253)||(20638-20859)
[»] chr4 (2 HSPs)
chr4 (17-253)||(43435155-43435379)
chr4 (17-208)||(43426695-43426874)


Alignment Details
Target: scaffold0252 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 20859 - 20638
Alignment:
Q  17 ctaatcacgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccttatcatcccaatcagaccctgaaataatgccaaccacctttt 116  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  20859 ctaatcacgaaattatccgaaag---aattttaaccttctccagttcattctcaaccttatcatcccaatcagacccttaagtaatgccaaccacctttt 20763  T
Q  117 tgacaacattctgcattgcattctgcattgcattctgctcaagcatccctttgtagaaatgtgaaagcgcaacaacatcactcttcaacttctccccttt 216  Q
    ||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20762 tgacaacattctgcattgcattctgc------------tcaagcatccctttgtagaaatgtgaaagcgcaacaacatcactcttcaacttctccccttt 20675  T
Q  217 taaacttgttgaaatcgtcacatgtgtctcttcatct 253  Q
    ||||||  |||||||||||||||||||||||||||||    
T  20674 taaactccttgaaatcgtcacatgtgtctcttcatct 20638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 43435379 - 43435155
Alignment:
Q  17 ctaatcacgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccttatcatcccaatcagaccctgaaataatgccaaccacctttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43435379 ctaatcacgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccttatcatcccaatcagaccctgaaataatgccaaccacctttt 43435280  T
Q  117 tgacaacattctgcattgcattctgcattgcattctgctcaagcatccctttgtagaaatgtgaaagcgcaacaacatcactcttcaacttctccccttt 216  Q
    | ||||||||||||||||            |||| ||||||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||||| |||    
T  43435279 taacaacattctgcattg------------cattttgctcaagcatccctttatagaaatgtgaaagtgcaacaatatcactcttcaaattctccctttt 43435192  T
Q  217 taaacttgttgaaatcgtcacatgtgtctcttcatct 253  Q
     ||||  || |||||||||| ||  ||||||||||||    
T  43435191 caaacccgtagaaatcgtcaaatacgtctcttcatct 43435155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 43426874 - 43426695
Alignment:
Q  17 ctaatcacgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccttatcatcccaatcagaccctgaaataatgccaaccacctttt 116  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| || ||  ||||||||||||||||||||||| |||||||||||||    
T  43426874 ctaatcacgaaattgtccgaaagttgaattttaaccttctcgagttcattctcaatctcattgtcccaatcagaccctgaaataataccaaccacctttt 43426775  T
Q  117 tgacaacattctgcattgcattctgcattgcattctgctcaagcatccctttgtagaaatgtgaaagcgcaacaacatcactcttcaacttc 208  Q
    |||||||| ||||||||            |||| |||||||||||||||||| |||||| |||||  | |||||||||||||||||| ||||    
T  43426774 tgacaacactctgcatt------------gcatcctgctcaagcatccctttatagaaacgtgaatactcaacaacatcactcttcatcttc 43426695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University