View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11252_high_28 (Length: 240)

Name: NF11252_high_28
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11252_high_28
NF11252_high_28
[»] chr7 (5 HSPs)
chr7 (140-233)||(36598601-36598694)
chr7 (18-98)||(36598479-36598559)
chr7 (25-54)||(5620259-5620288)
chr7 (20-52)||(25507244-25507276)
chr7 (19-51)||(27708935-27708967)
[»] chr8 (1 HSPs)
chr8 (19-56)||(12225028-12225065)
[»] chr5 (2 HSPs)
chr5 (19-56)||(30845195-30845232)
chr5 (26-54)||(38149407-38149435)
[»] chr4 (2 HSPs)
chr4 (25-54)||(14011125-14011154)
chr4 (26-54)||(30090133-30090161)
[»] chr3 (1 HSPs)
chr3 (25-54)||(37308230-37308259)
[»] chr1 (1 HSPs)
chr1 (25-54)||(4076740-4076769)
[»] chr2 (2 HSPs)
chr2 (25-53)||(5452243-5452271)
chr2 (26-54)||(5752766-5752794)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 36598601 - 36598694
Alignment:
Q  140 tggtggatagtgtggactatatgcatttagtgaaaggatatgatattacaccaacctcttggtgtgctgttcgtttgaacttctctctctgctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36598601 tggtggatagtgtggactatatgcatttagtgaaaggatatgatattacaccaacctcttggtgtgctgttcgtttgaacttctctgtctgctt 36598694  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 36598479 - 36598559
Alignment:
Q  18 gtaagttcttaattaagttgtttatccaaacagggccctggtccaaaagatttgcatctctaattgttcggagaaatggag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36598479 gtaagttcttaattaagttgtttatccaaacagggccctggtccaaaagatttgcatctctaattgttcggagaaatggag 36598559  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 5620259 - 5620288
Alignment:
Q  25 cttaattaagttgtttatccaaacagggcc 54  Q
    ||||||||||||||||||||||||||||||    
T  5620259 cttaattaagttgtttatccaaacagggcc 5620288  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 25507276 - 25507244
Alignment:
Q  20 aagttcttaattaagttgtttatccaaacaggg 52  Q
    |||| ||||||||||||||||||||||||||||    
T  25507276 aagtgcttaattaagttgtttatccaaacaggg 25507244  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 27708935 - 27708967
Alignment:
Q  19 taagttcttaattaagttgtttatccaaacagg 51  Q
    ||||| |||||||||||||||||||||||||||    
T  27708935 taagtgcttaattaagttgtttatccaaacagg 27708967  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 12225028 - 12225065
Alignment:
Q  19 taagttcttaattaagttgtttatccaaacagggccct 56  Q
    |||| |||||||||||||||||||||||||||||||||    
T  12225028 taagctcttaattaagttgtttatccaaacagggccct 12225065  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 30845232 - 30845195
Alignment:
Q  19 taagttcttaattaagttgtttatccaaacagggccct 56  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  30845232 taagtgcttaattaagttgtttatccaaacaggaccct 30845195  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 38149407 - 38149435
Alignment:
Q  26 ttaattaagttgtttatccaaacagggcc 54  Q
    |||||||||||||||||||||||||||||    
T  38149407 ttaattaagttgtttatccaaacagggcc 38149435  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 14011154 - 14011125
Alignment:
Q  25 cttaattaagttgtttatccaaacagggcc 54  Q
    ||||||||||||||||||||||||||||||    
T  14011154 cttaattaagttgtttatccaaacagggcc 14011125  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 30090161 - 30090133
Alignment:
Q  26 ttaattaagttgtttatccaaacagggcc 54  Q
    |||||||||||||||||||||||||||||    
T  30090161 ttaattaagttgtttatccaaacagggcc 30090133  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 37308230 - 37308259
Alignment:
Q  25 cttaattaagttgtttatccaaacagggcc 54  Q
    ||||||||||||||||||||||||||||||    
T  37308230 cttaattaagttgtttatccaaacagggcc 37308259  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 4076740 - 4076769
Alignment:
Q  25 cttaattaagttgtttatccaaacagggcc 54  Q
    ||||||||||||||||||||||||||||||    
T  4076740 cttaattaagttgtttatccaaacagggcc 4076769  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 5452271 - 5452243
Alignment:
Q  25 cttaattaagttgtttatccaaacagggc 53  Q
    |||||||||||||||||||||||||||||    
T  5452271 cttaattaagttgtttatccaaacagggc 5452243  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 5752766 - 5752794
Alignment:
Q  26 ttaattaagttgtttatccaaacagggcc 54  Q
    |||||||||||||||||||||||||||||    
T  5752766 ttaattaagttgtttatccaaacagggcc 5752794  T

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