View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11252_high_3 (Length: 691)
Name: NF11252_high_3
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_high_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 145 - 684
Target Start/End: Complemental strand, 16084482 - 16083941
Alignment:
| Q |
145 |
acactagtaatgattgaaaaacatgaaagatgattgaaccagtgtcaaacaccaacatgtgttagacacctaacacatcttcaatctaaagtacctatgc |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16084482 |
acactagtaatgattgaaaaacatgaaagatgattgaaccgatgtcagacaccaacatgtgttagacacctaacacatcttcaatctaaagtacctatgc |
16084383 |
T |
|
| Q |
245 |
ca--tgggttgacgtatcaagttggaacttacattgaaaactctcaatgaaatttgtatttatgtagttctttctgactgtggtcgatgagtctctcttt |
342 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16084382 |
cacatgggttgacgtatcaagttggaacttacattgaaaactctcaatgaaatttgtatttatgtagttctttatgactgtggtcgatgagtctctcttt |
16084283 |
T |
|
| Q |
343 |
aaagttttgaaaagaaagaagaaattattcaattacctctattgcatctccaacattgacaactagagcatctgatatgggagttaccggtacccaattt |
442 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16084282 |
aaagttttgaaaaaagagaagaaattattcaattacctctattgcatctccaacattgacaactagagcatctgctatgggagttaccggtacccaattt |
16084183 |
T |
|
| Q |
443 |
cctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactttctcag |
542 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
16084182 |
cctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggttgagtcacagtgtggtctcaaacctaatactttctcag |
16084083 |
T |
|
| Q |
543 |
gcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccataattacagacaa |
642 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16084082 |
gcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttctccaaacccataattacagacaa |
16083983 |
T |
|
| Q |
643 |
agaacttagaagttcataaccaactcgtttcatctcactcga |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
16083982 |
agaacttagaagttcataaccaactcgtttcacttcactcga |
16083941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 361 - 668
Target Start/End: Original strand, 22775623 - 22775930
Alignment:
| Q |
361 |
aagaaattattcaattacctctattgcatctccaacattgacaactagagcatctgatatgggagttaccggtacccaatttcctttgtgtcgaatttct |
460 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||| |
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| T |
22775623 |
aagaaattattcaattacctctattacatctccgacattgacaactagagcatctgatattggagtaacgggtacccaatttcctttatgtcgaatttct |
22775722 |
T |
|
| Q |
461 |
aacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactttctcaggcatgctgcaaggagggt |
560 |
Q |
| |
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|| ||||| |||||||||||||||| |||||| ||||||||| | || || ||||||| |||||||| || |||| |||||| || ||||||||||| |
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| T |
22775723 |
aatccaggcacatcatcatcttgcataagtaaagtaatggtgcttgagtcggagtgtggactcaaacccaacacttgctcaggtgtgtcgcaaggagggt |
22775822 |
T |
|
| Q |
561 |
aatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccataattacagacaaagaacttagaagttcata |
660 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||| || ||||| |||| || | ||| |||||||| ||||||||||||||||||||||| | |
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| T |
22775823 |
aatagttcacacgtaaaccctgaagtacttctttatgcagtccagcaagaacatgtttttccaaccccataataacagacaaagaacttagaagttcgtc |
22775922 |
T |
|
| Q |
661 |
accaactc |
668 |
Q |
| |
|
|||||||| |
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|
| T |
22775923 |
accaactc |
22775930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 16084676 - 16084483
Alignment:
| Q |
18 |
aactatgagccatacccaacatgttttctttaggctcacaacataaacaattcaattatggagcagacacctatgaagtgctgat---nnnnnnnttgac |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
16084676 |
aactatgagccatacccaacatgttttctttaggctcacaacataaacaattcaattatggagcagacacctatgaagtgctgataaaaaaaaactagac |
16084577 |
T |
|
| Q |
115 |
atgggacacgacactgacacttacgcttagacactagtaatgattgaaaaacatgaaagatgattgaaccagtgtcaaacaccaacatgtgtta |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
16084576 |
atgggacccgacactgacacttacgcttagacactagtaatgattgaaaaacatgaaagatgattgaaccgatgtcagacaccaacatgtgtta |
16084483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 375 - 670
Target Start/End: Original strand, 22778792 - 22779087
Alignment:
| Q |
375 |
ttacctctattgcatctccaacattgacaactagagcatctgatatgggagttaccggtacccaatttcctttgtgtcgaatttctaacccaggaacatc |
474 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||| || | |||||||||||||||||||||| || |||||||| ||| | ||||| |
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|
| T |
22778792 |
ttacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatc |
22778891 |
T |
|
| Q |
475 |
atcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactttctcaggcatgctgcaaggagggtaatagttcacacgt |
574 |
Q |
| |
|
||||||||| | |||||||||||||||||| | ||| ||||||| |||||||| ||||||| |||||| || |||||||||||||||||||||| ||| |
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| T |
22778892 |
atcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacgcgt |
22778991 |
T |
|
| Q |
575 |
aaaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccataattacagacaaagaacttagaagttcataaccaactcgt |
670 |
Q |
| |
|
|||||||||| || ||||||||| |||||| | |||||||| |||| ||| ||||| || | ||||| | ||||||||||||| | ||||||||| |
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| T |
22778992 |
aaaccttgaattaattctttatgcagttcagcgagagcatgtttctccaaccccatgataatagacagaaaacttagaagttcctcgccaactcgt |
22779087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 376 - 674
Target Start/End: Original strand, 22766121 - 22766419
Alignment:
| Q |
376 |
tacctctattgcatctccaacattgacaactagagcatctgatatgggagttaccggtacccaatttcctttgtgtcgaatttctaacccaggaacatca |
475 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||| ||| | || || |||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
22766121 |
tacctctataacatctccaacattgacaacaagagcatctgatattggaataactggaacccaatttcctttgtttcgaatttctaacccaggcacatca |
22766220 |
T |
|
| Q |
476 |
tcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactttctcaggcatgctgcaaggagggtaatagttcacacgta |
575 |
Q |
| |
|
|||||||||| ||| | |||||||||| | ||| |||||| |||||||| ||||||| ||||| || |||| | |||||||||||| |||||| |
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| T |
22766221 |
tcatcttgcataagaatggtaatggtgcctgtgtcagagtgtgagctcaaacccaatacttgatcaggtgtgttgcatgtagggtaatagtttacacgtg |
22766320 |
T |
|
| Q |
576 |
aaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccataattacagacaaagaacttagaagttcataaccaactcgtttca |
674 |
Q |
| |
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||| |||||||| ||||||||| | ||| ||||||||| |||| ||| |||||||| | ||||||||||||||||||||| | |||||||||||||| |
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|
| T |
22766321 |
aacattgaagtaattctttatgcatcccaaaaagagcatgtttctccaaccccataataagagacaaagaacttagaagttcctcaccaactcgtttca |
22766419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 431 - 681
Target Start/End: Original strand, 22783295 - 22783545
Alignment:
| Q |
431 |
ggtacccaatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaaccta |
530 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||| || |||||||||||| | ||| | || | |||| ||||| |
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|
| T |
22783295 |
ggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcataccta |
22783394 |
T |
|
| Q |
531 |
atactttctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttcttcaaacccat |
630 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||||||||| |||||| | ||||||||| | | |||||||||||||||||| || ||||| |
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|
| T |
22783395 |
atacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaagagcatgcttctctaaccccat |
22783494 |
T |
|
| Q |
631 |
aattacagacaaagaacttagaagttcataaccaactcgtttcatctcact |
681 |
Q |
| |
|
||| | |||||||||||||| |||||| | |||||||||||||| ||||| |
|
|
| T |
22783495 |
aataatagacaaagaacttaaaagttcctcgccaactcgtttcatttcact |
22783545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 610
Target Start/End: Complemental strand, 23278182 - 23277948
Alignment:
| Q |
376 |
tacctctattgcatctccaacattgacaactagagcatctgatatgggagttaccggtacccaatttcctttgtgtcgaatttctaacccaggaacatca |
475 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||| ||||| || ||| ||| | | ||||||||||||||||||| ||||| ||||||||||| |||||| |
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|
| T |
23278182 |
tacctctattacatctccaagattgaccactaaagcatttggtattggattaattggtacccaatttcctttgtatcgaacttctaacccagttacatca |
23278083 |
T |
|
| Q |
476 |
tcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactttctcaggcatgctgcaaggagggtaatagttcacacgta |
575 |
Q |
| |
|
|| ||||||| || || |||| ||| | | |||| ||||||| |||| || | ||||| ||| || || | |||||||| |||||||||||||||| |
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|
| T |
23278082 |
tcgtcttgcataactattgtaactgtgcttgcatcagagtgtggagtcaacccaattacttgctctggtgtgttacaaggaggataatagttcacacgta |
23277983 |
T |
|
| Q |
576 |
aaccttgaagtacttctttatgtagttcaacaaga |
610 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| |
|
|
| T |
23277982 |
aaccttgaagtacttctttatgtagtccaagaaga |
23277948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 375 - 615
Target Start/End: Original strand, 22770505 - 22770745
Alignment:
| Q |
375 |
ttacctctattgcatctccaacattgacaactagagcatctgatatgggagttaccggtacccaatttcctttgtgtcgaatttctaacccaggaacatc |
474 |
Q |
| |
|
||||||||||| ||||||||||||| || |||| |||| ||| ||| ||||| | ||||||||||||| ||||| |||||||||| ||| | ||||| |
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|
| T |
22770505 |
ttacctctattacatctccaacattaaccactaaagcacctggtattggagtaattggtacccaatttcttttgtatcgaatttctgtccctgatacatc |
22770604 |
T |
|
| Q |
475 |
atcatcttgcaaaagtaaggtaatggtggtcgaatcacagtgtggtctcaaacctaatactttctcaggcatgctgcaaggagggtaatagttcacacgt |
574 |
Q |
| |
|
||| ||||||| || || | |||||| | | |||| |||| || |||| ||||| ||||||||| || || | ||||||||||||||||||||||| |
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|
| T |
22770605 |
atcgtcttgcataactattgcaatggtccttggatcagagtgcggactcacacctagtactttctcgggtgtgttacaaggagggtaatagttcacacgg |
22770704 |
T |
|
| Q |
575 |
aaaccttgaagtacttctttatgtagttcaacaagagcatg |
615 |
Q |
| |
|
||||||||| |||||||| ||||||| |||| |||| |||| |
|
|
| T |
22770705 |
aaaccttgatgtacttctctatgtagatcaagaagaccatg |
22770745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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