View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_high_30 (Length: 236)
Name: NF11252_high_30
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 53456982 - 53456775
Alignment:
| Q |
10 |
agtagcatagggactataaattaacctcttaaggtgaataaatgaggtaagacttacgtagacaaaaatataattattaaatcggaagaatttataattt |
109 |
Q |
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| T |
53456982 |
agtagcatagtgactataaattaacctcttaaggtgaataa-tgaggtaagacttacgcagacgaaaatataattattaaatcggaagaatttataattt |
53456884 |
T |
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| Q |
110 |
cactaatcagaataattaaatctatttatttgaatgtctaataaattgttccttccgattcctattctaaattgttccctccaattcctaattataaaac |
209 |
Q |
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| T |
53456883 |
ctctaatcagaataattaaatctatttatttgaatgtctaataaattgttccttccaattcctattataaattgttccctccaattcctaattataaaac |
53456784 |
T |
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| Q |
210 |
ccacctttc |
218 |
Q |
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| T |
53456783 |
ccacctttc |
53456775 |
T |
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