View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_high_5 (Length: 621)
Name: NF11252_high_5
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 19 - 612
Target Start/End: Complemental strand, 3934165 - 3933574
Alignment:
| Q |
19 |
tcacctccttcataacctattccttgaacgacaccgacactacctgggccaattgatttccaattatttacgttttctttcagcctcacccactctccca |
118 |
Q |
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| T |
3934165 |
tcacctccttcataacctattccttgaacgacaccgacactacctgggccaattgatttccaattatttacgttttctttcagcctcacccactctccca |
3934066 |
T |
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| Q |
119 |
cttcaaagatttgttctgcctgcagatctgaaggatcgcctttccacagtcccgacaaaccaaagaatgcaaccctgacttctccatccgcatgaatact |
218 |
Q |
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| T |
3934065 |
cttcaaagatttgttctgcctgcagatctgaaggatcgcctttccacagtcccgacaaaccaaagaatgcaaccctgacttctccatccgcatgaatatt |
3933966 |
T |
|
| Q |
219 |
ggttataataccttgagattcaggctgagccccgccccaaccaaacctgggttcagccaaaccaggtcggaacctaacatactgcccgactttaaagcta |
318 |
Q |
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| T |
3933965 |
ggttataataccttgagattcaggctgagccccgccccaaccaaacctgggttcagccaaaccaggtcggaacctaacatactgcccgactttaaagcta |
3933866 |
T |
|
| Q |
319 |
ggaaccttttcaacatctgtataatgagtgatccacttccctttacggaaacagcaagccaactccaaatatccagaatcctgtacactatgcacaacag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3933865 |
ggaaccttttcaacatctgtataatgagtgatccacttccctttacggaaacaacaagccaactccaaatatccagaatcctgtacactatgcacaacag |
3933766 |
T |
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| Q |
419 |
ctaaactctctctcccaacactattccagtcataacttggtctatttcccaggcttggtttagagcgtacccaatctccaacctcaaatcctggaagtcg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3933765 |
ctaaactctctctcccaacactattccagtcataacttggtctatttcccaggcttggtttagagcgtacccaatctccaacctcaaatcctggaagtcg |
3933666 |
T |
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| Q |
519 |
ttctgcatctccaggagaaactttccacaagctctgcctaccagtgaccctcgcctacaaacaaaaaacatttaaaacacatattgtctgatgt |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3933665 |
ttctgcatctccaggagaaactttccacaagctctgcctaccagtgaccctcgcctacaaacaaaaaacatttaaaacac--attgtctgatgt |
3933574 |
T |
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