View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_11 (Length: 442)
Name: NF11252_low_11
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 197 - 442
Target Start/End: Complemental strand, 41331082 - 41330837
Alignment:
| Q |
197 |
tttgaacaagaattgtttccatcaaaaatctaactaggttctttcgaattattcaatctaggggctcattaatcactttgagctcaatcacttgataaca |
296 |
Q |
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| T |
41331082 |
tttgaacaagaattgtttccatcaaaaatctaactaagttctttcgaattattcaacctaaggtttcattaatcactttgagcttaatcacttgatagga |
41330983 |
T |
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| Q |
297 |
tctgttactcttgaatcaatgaatctgtactcttgaatcaaatttattcctaatcaatgagtattcacaaaagatgttgtttcattaacctgaaccataa |
396 |
Q |
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| T |
41330982 |
tctgttattcttgaatcaatgaatatgtacttttgaatcaaatttattcctaatcaacgagtattcacaaaagatgttgtttaattaacctgaaccataa |
41330883 |
T |
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| Q |
397 |
tcgtggatgaaacatatattcatacatcaacaaaaagccaaggtct |
442 |
Q |
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| T |
41330882 |
tcgtggatgaaacatatattcatacatcaacaaaaaaccaaggtct |
41330837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 41331195 - 41331139
Alignment:
| Q |
21 |
aacagacaacacctcgaaaaagcaggggtgtggacttgagttttaacatatatcaat |
77 |
Q |
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| T |
41331195 |
aacagacaatactttgaaaaagtaggggtgtggacttgagttttaacatatatcaat |
41331139 |
T |
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