View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11252_low_12 (Length: 442)
Name: NF11252_low_12
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 25645083 - 25644664
Alignment:
| Q |
15 |
aaaatattccttcaggtacatttgagtctatgcagaatttgccacagttaccactagagcagttttgttttcaacgagatgaagatatcaaaaccatctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
25645083 |
aaaatattccttcaggtacatttgagtctatgcagaatttgccacagttaccactagagcagttttgttttcaaggagataaagatatcaaaaccatctt |
25644984 |
T |
|
| Q |
115 |
tgatgccactatgaaatattaattagtcactatcttaaattagttgtgagcttttgtaatggttgaatgctatatatcttatgagtgatattaatgtagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25644983 |
tgatgccactatgaaatattaattagtcactatcttaaattagttgtgagcttttgtaatggttgaatgctatatatcttatgagtgatattaatgtagt |
25644884 |
T |
|
| Q |
215 |
gaaagttcaatgtagattttgcatgtaattgttgcatactagaagtgtctttgtctatcaaaaagcactatattctatgtgccaaaaatgcaacatgtat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25644883 |
gaaagttcaatgtagattttgcatgtaattgttgcatactagaagtgtctttgtctatcaaaaagcact-tattctatgtgccaaaaatgcaacatgtat |
25644785 |
T |
|
| Q |
315 |
ggtcttggtgattatttgcattgatgtcttatgtagagcaaggtttttgaaagagacaacaagaatttgtcttgttttgtgtttttgtaacatcgagggt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25644784 |
ggtcttggtgattatttgcattgatgtcttatgtagagcaaggtttttgaaagagacaacaaaaatttgtcttgttttgtgtttttgtaacatcgagggt |
25644685 |
T |
|
| Q |
415 |
caatgtagccagggccctttg |
435 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
25644684 |
caatgtagccagggccgtttg |
25644664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University