View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11252_low_14 (Length: 429)
Name: NF11252_low_14
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 39688571 - 39688968
Alignment:
| Q |
19 |
cttatggattagca---ggatttcccattcaaaataactaagttcataagtgcaagaagaatctagctacctagctgcaatctcataagaataagaaaca |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39688571 |
cttatggattagcataaggatttcccattcaaaataactaagttcataagtgcaagaagaatctagctacctagctgcaatctcataagaataagaaaca |
39688670 |
T |
|
| Q |
116 |
tatgctgctcaaatgaacaaaattaacaaatttacgatcaacttcacaatgaaaaagtgttaagatttacataacttgtgaatatgatgaagctttttta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39688671 |
tatgctgctcaaatgaacaaaattaacaaatttacgatcaacttcacaatgaaaaagtgttaagatttacataacttgtgaatatgatgaagctttttta |
39688770 |
T |
|
| Q |
216 |
ggttgtattgtgttctagtgtcctaggaactctcaataaagtcaaagttgatga--------------------tccatgctatgataacaacagtgtta |
295 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39688771 |
ggttgtattgtgttctagtgtcctaggagctctcaataaagtcaaagttgatgatacaagacctaattttatattccatgctatgataacaacagtgtta |
39688870 |
T |
|
| Q |
296 |
cattcttcacctgtatagataataacatatctttgattaattattgcacaatgataccaatatgtaaccattgagataaatgtgaaagtgaaatgtgt |
393 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39688871 |
cattcttcacctgtgtagataataacatatctttgattaattattgcacaatgataccaatatgtaaccattgagataaatgtgaaagtgaaatgtgt |
39688968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 30903094 - 30903004
Alignment:
| Q |
27 |
ttagcaggatttcccattcaaaataactaagttcataagtgcaagaagaatctagctacctagctgcaatctcataagaataagaaacata |
117 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||| |||| ||| ||| ||||| || |||||||||||||||||| ||||||||||||||| |
|
|
| T |
30903094 |
ttagcaggatctccaattcaaaataaccaagttaataactgctagatgaatcaaggtacctagctgcaatctcaggagaataagaaacata |
30903004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University