View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_17 (Length: 352)
Name: NF11252_low_17
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 48882247 - 48882574
Alignment:
| Q |
16 |
tcaataacaatagattgttgtcatgcttatttgaagtctttggaagagtcgtaacacaaagctttgagagtcgttagacaccccaactgctttcactatc |
115 |
Q |
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| T |
48882247 |
tcaacaacaatagattgttgtcatgcttatttgaagtctttggaagagtcgtaacacaaagctttgagagtcgttagacaccccaactgctttcactatc |
48882346 |
T |
|
| Q |
116 |
cctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaaacctccgt |
215 |
Q |
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| T |
48882347 |
cctcgagcaaaagttactctccatgaatggagttgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaaacctccgt |
48882446 |
T |
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| Q |
216 |
tgggtgcattaaagtgcaacatggactcataaatttttcaaaacaacgccatatcaaaatatggattttgcttctggaactctgaggggcaattcataat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48882447 |
tgggtgcattaaagtgcaacatggactcataaatttttcaaaacaacgcgatatcaaaatatggactttgcttctggaactctgaggggcaattcataat |
48882546 |
T |
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| Q |
316 |
atgtaagtctcttttctcttattcatct |
343 |
Q |
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| T |
48882547 |
atgtaagtctcttttctcttattcatct |
48882574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 52964653 - 52964560
Alignment:
| Q |
117 |
ctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaaacc |
210 |
Q |
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| T |
52964653 |
ctcgagcaaaggatacactccatgaatggacttgtatgcaaagagctaaaccacaggtacaaaattcgaaccacatcatctcttgggtcaaacc |
52964560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 51492272 - 51492179
Alignment:
| Q |
117 |
ctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaaacc |
210 |
Q |
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| T |
51492272 |
ctcgagcaaaggatacactccatgaatggacttgtatgcaaagagctaaaccacaggtacaaaattcgaaccacataatctcttgggtcaaacc |
51492179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 10813650 - 10813557
Alignment:
| Q |
117 |
ctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaaacc |
210 |
Q |
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| T |
10813650 |
ctcgagcaaaggatacactccacgaatggacttgtatgcaaagagctaaaccacaggtacaaaattcgaaccacatcatctcttgggttaaacc |
10813557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 33495630 - 33495526
Alignment:
| Q |
108 |
tcactatccctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaa |
207 |
Q |
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|||| ||| |||||||||| || ||||| |||||||||||||| ||||||||| ||| ||||| || |||| |||| || ||||||||||||| || |
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| T |
33495630 |
tcaccatctctcgagcaaatgacactcttcatgaatggaattgcatgcaaagagcaaaaacttagccactaaacccggatcatcatatctcttgggttaa |
33495531 |
T |
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| Q |
208 |
acctc |
212 |
Q |
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||||| |
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| T |
33495530 |
acctc |
33495526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 10530114 - 10530080
Alignment:
| Q |
53 |
ctttggaagagtcgtaacacaaagctttgagagtc |
87 |
Q |
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| T |
10530114 |
ctttggaagagtcgtaacacaaagctttgggagtc |
10530080 |
T |
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