View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_18 (Length: 344)
Name: NF11252_low_18
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 5384426 - 5384237
Alignment:
| Q |
17 |
cttacaataagctatttcaatttcatccatttgtagatcacagaaatctctcaagtgtaatcaattaagttcattgaagcacttgttttacataatttct |
116 |
Q |
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| T |
5384426 |
cttacaataagctatttcaatttcatccatttgtagatcacagaaatctctcaagtgtaatcaattaagttcattgaagcacttgttttacataatttct |
5384327 |
T |
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| Q |
117 |
ctaaacaaaatcaaaagcttctctatatacttatacaactttcactctgctatagacagatacctatgtagcaccgacacttcctaatgg |
206 |
Q |
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| T |
5384326 |
ctaaacaaaatcaaaagcttctctatatacttatacaactttcactctactatagacagatacctatgtagcaccgacacttcctaatgg |
5384237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 233 - 339
Target Start/End: Complemental strand, 5384210 - 5384105
Alignment:
| Q |
233 |
taggagggtaaacaaatatatttagcataacgagaattcatttttcaagatcaatcacttcaagtatcaccttcacatgatgcccttcttggcttgtctc |
332 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5384210 |
taggagggtaaacaaatatatttagcataacgagaat-catttttcaagatcaatcacttcaagtatcaccttcacatgatgcccttcttggcttgtccc |
5384112 |
T |
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| Q |
333 |
tgctcct |
339 |
Q |
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||||||| |
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| T |
5384111 |
tgctcct |
5384105 |
T |
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