View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_19 (Length: 327)
Name: NF11252_low_19
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 14202362 - 14202108
Alignment:
| Q |
18 |
aaagatgcatgcacaccttttaaatgtaactcaattatttataaagaaatagtatatagtatttccccatgtgtagctcattgtttgaatttgtatttag |
117 |
Q |
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| T |
14202362 |
aaagatgcatgcacaccttttaaatgtaactcaattatttataaagaaatagtatatagtatttccccatgtgtagctcattgtttgaatttgtatttag |
14202263 |
T |
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| Q |
118 |
aagatattaagaaaaattcaaacgtccaaaaagtgctagaggaagcnnnnnnnggtgactttgtttatatacaaccatatttggacactgagtttgatgt |
217 |
Q |
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| T |
14202262 |
aagatattaagaaaaattcaaacgtccaaaaagtgctagaggaagc-aaaaaaggtgactttgtttatatacaaccatatttggacactgagtttgatgt |
14202164 |
T |
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| Q |
218 |
tgaaatatactatactgatgataaagaacttattcgtccaacaatcactcgttttg |
273 |
Q |
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| T |
14202163 |
tgaaatatactatactgatgataaagaacttattcgtccaacaatcactcattttg |
14202108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 14202089 - 14202044
Alignment:
| Q |
271 |
ttgaatcaattgttaaataaattgaagttttatattacaggttctt |
316 |
Q |
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| T |
14202089 |
ttgaatcaattgttaaataaattgaagttttatattacaggttctt |
14202044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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