View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_20 (Length: 324)
Name: NF11252_low_20
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 39 - 306
Target Start/End: Complemental strand, 7306094 - 7305827
Alignment:
| Q |
39 |
catcaataatttttcttgtcaatttatgtgtttgattattctaatgtactgaagattccaaattcctaacattttcaatgttctgattagtttatgtcca |
138 |
Q |
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| T |
7306094 |
catcaataatttttcttatcaatttatgtgtttgattattctaatgtactgaacattccaaattcctaacattttcaatgttctgattagtttatgtcca |
7305995 |
T |
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| Q |
139 |
atgcagtatactaattatatttatcttaatagttcataagtcatcttgctattttagtttgacaactgattttgattcaacttactgctttccattgtgt |
238 |
Q |
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| T |
7305994 |
atgcagtatactaattataattatcttaatagttcatgggtcatcttgctattttagtttgacaactgattttgattcaacttactgctttccattgtgt |
7305895 |
T |
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| Q |
239 |
tatgatgttaatgtcatatgnnnnnnnngcctagcttggtaaagcaacggcatcccgatacaatatgt |
306 |
Q |
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| T |
7305894 |
tatgatgttaatgtcatatgttttttttgcctagcttggtaaagcaacggcatcccgatacaatatgt |
7305827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 8240553 - 8240593
Alignment:
| Q |
120 |
tctgattagtttatgtccaatgcagtatactaattatattt |
160 |
Q |
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| T |
8240553 |
tctgattagtttatgtccaatgcagtatgctcgttatattt |
8240593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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