View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_23 (Length: 272)
Name: NF11252_low_23
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 42826005 - 42825738
Alignment:
| Q |
1 |
cattccttttgcaaatttggttgcttggacttacagttaagaagtatcaactcaaatactacctatattgggattattctgcgtaagaatttttgttgcc |
100 |
Q |
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| T |
42826005 |
cattccttttgcaaatttggttgcttggacttaaagttaagaagtatcaactcgaatactacctatattgggattattctgcgtaagaatttttgttgcc |
42825906 |
T |
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| Q |
101 |
tttcgaacttgagtgtggggttagaaatggaaatgaaatggttactggtttgttttgtacctcacgaaaaaagctagtttttccttgagaaagagatttt |
200 |
Q |
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| T |
42825905 |
tttcgaacttgagtgtggggttagaaatggaaatgaaatggttactggtttgttttgtacctcacgaaaaaagctagtttttccttgagaaagagatttt |
42825806 |
T |
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| Q |
201 |
caagttgacgactcttcaagtttgctgaattcatgtcaacaatggtataatttttggtgatgtccatc |
268 |
Q |
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| T |
42825805 |
caagttgacgactcttcaagtttgctgaattcatgtcaacaatggtataatttttggtgatgtacatc |
42825738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 42846560 - 42846486
Alignment:
| Q |
120 |
gttagaaatggaaatgaaatggttactggtttg-----ttttgtacctcacgaaaaaagctagtttttccttgaga |
190 |
Q |
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| T |
42846560 |
gttagaaatgggaatgaaatggttactggttagatttcttttgtacctcac-aaaaaagctagtttttccttgaga |
42846486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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