View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11252_low_24 (Length: 270)
Name: NF11252_low_24
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 40751118 - 40750879
Alignment:
| Q |
15 |
cacagagttataaaagagcaaagatttctcatctgaaacctgcccaataaaaagatgggtcatgcaaatcatgtttcattgcaagggaccaactagttct |
114 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40751118 |
cacaaagttataaaagaacaaagatttctcatctgaaacctgcccaataaaaagatgggtcatgcaaatcatgtttcattgcaagggaccaactagttct |
40751019 |
T |
|
| Q |
115 |
ataaacaccaacatgtcttttaccgtacctaacatgtttgtacatatttatacac--acacnnnnnnnnnnnnnnttgtacataatttttgatgctggat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
40751018 |
ataaacaccaacatgtcttttaccgtacctaacatgtttgtacatatttatacacacacacaaaaaaaaaaaaaattgtacataatttttgatgctggat |
40750919 |
T |
|
| Q |
213 |
gaaaatatgaatcattgacacagacaacaaacatgacact |
252 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
40750918 |
gaaaatatgaatcattaacacagacaccaaacatgacact |
40750879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University