View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11252_low_25 (Length: 264)
Name: NF11252_low_25
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_25 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 42826284 - 42826037
Alignment:
| Q |
17 |
aagttgtttatccaaagttccaaacatggcctaaaactaatttaaccatgagtactatagtttatgatttaaagtttatttttgtgttcatttggttatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42826284 |
aagttgtttatccaaagttccaaacatggcctaaaactaatttaaccatgagtactatagtttatgatttaaagtttatttttgtgttcatttggttatg |
42826185 |
T |
|
| Q |
117 |
atagcttaacagccttttatggacatgtataatttgatttcatattcaatataaggtatggtgtttccttcttctatactattagcctcctgccttcctt |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42826184 |
atagcttaatagccttttatggacatgtataatttgatttcatattcaatataaggtatggtgtttccttcttctatactattagcctcctgccttcctt |
42826085 |
T |
|
| Q |
217 |
tttagttggttacaaattccaatattattatgtatgggatcaagtttt |
264 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42826084 |
tttagttggttacagattccaatattattatgtatgggatcaagtttt |
42826037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University