View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_26 (Length: 262)
Name: NF11252_low_26
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 1583489 - 1583262
Alignment:
| Q |
15 |
tggacatcactatc---atcaacatcattagctctcaacctcatgttttcatcatgttagtcacgttgtcgtatttaaatcgtagcttcagcttcactcc |
111 |
Q |
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| T |
1583489 |
tggacatcactatcatcatcatcatcattggctctcaacctcatgttttcatcatgttagccacgttgtcgtatttaaaacgtagcttcagcttcactcc |
1583390 |
T |
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| Q |
112 |
tttaaaacttgtatcatgtggactaattgagaactaacaattatgtgtagctaaatcccctaaataaattaggtgtagctaaatcatttggtcgtggcag |
211 |
Q |
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| T |
1583389 |
tttaaaacttgtatcatatggactaattgagaactaacaattatgtgtagctaaatcccctaaataaattaggtgtagctaaatcatttggtcgtggcag |
1583290 |
T |
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| Q |
212 |
tagttgctattgagcttgagtaatcatc |
239 |
Q |
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| T |
1583289 |
tagttgctattgagcttgagtaatcatc |
1583262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 1581098 - 1581046
Alignment:
| Q |
185 |
tgtagctaaatcatttggtcgtggcagtagttgctattgagcttgagtaatcat |
238 |
Q |
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| T |
1581098 |
tgtagctaaataattttgtcgtggcagtagttg-tattgagcttgagtaatcat |
1581046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 1574133 - 1574071
Alignment:
| Q |
103 |
cttcactcctttaaaacttgtatcatgtggactaattgagaactaacaattatgtgtagctaaat |
167 |
Q |
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| T |
1574133 |
cttcacgcctttaaaactagta--atatagactaattgagaacaaacaattatgtgtagctaaat |
1574071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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