View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_29 (Length: 249)
Name: NF11252_low_29
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 46933071 - 46932856
Alignment:
| Q |
11 |
gtgagatgaatgaatgtaatgtgtgtgtgaatagttgataaataatgagagaaattgagtacaagagaggaaatgctggtttgatgcatgttaatgttac |
110 |
Q |
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| T |
46933071 |
gtgagatgaatgaatgtaatgtgtgtgtgaatagttgataaataatgagagaaattgagtacaagagaggaaatgctggtttgatgcatgttaatgttac |
46932972 |
T |
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| Q |
111 |
taagaagctctatttatacatgatttgttaaacactaaaaattaatatgatattgtcaaactccatgatttgttcaataataaataataatataggctct |
210 |
Q |
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| T |
46932971 |
taagaagctctatttatacatgatttgttaaacactaaaaattaatatgatattgtcaaactccatgatttgttcaataataataaataatataggctct |
46932872 |
T |
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| Q |
211 |
ctagttctaaagtcaa |
226 |
Q |
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| T |
46932871 |
ctagttctaaagtcaa |
46932856 |
T |
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