View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_31 (Length: 238)
Name: NF11252_low_31
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 43460135 - 43460359
Alignment:
| Q |
1 |
tcaacatggtataaggtttgttaagatgatgtaatgtatgatgatacctcttgcaagaaatctgcagttccttttctctcaggacatttaaacccacatg |
100 |
Q |
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| T |
43460135 |
tcaacatggtataaggtttgttaagatgatgtaatgtatgatgatacctcttgcaagaaatctgcagttccttttctctcaggacatttaaacccacatg |
43460234 |
T |
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| Q |
101 |
actcaaagaattgaaggacatggtcacgtgagccttgatatactatctgaccctctgatattaagataatatcatcaaagagatcaaatgtctcaggagc |
200 |
Q |
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| T |
43460235 |
actcaaagaattgaaggacatggtcacgtgagccttgatatactatctgaccctctgatattaagataatatcatcaaagagatcaaatgtctcaggagc |
43460334 |
T |
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| Q |
201 |
aggttgaagtaaggacatgaatatg |
225 |
Q |
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| T |
43460335 |
aggttgaagtaaggacatgaatatg |
43460359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 4498205 - 4498040
Alignment:
| Q |
44 |
atacctcttgcaagaaatctgcagttccttttctctcaggacatttaaacccacatgactcaaagaattgaaggacatggtcacgtgagccttgatatac |
143 |
Q |
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| T |
4498205 |
atacctcttgcaagaaatcagcggttccctttctttcagggcaacggaacccacaagattcaaagaattcaacaatgtgttcacgtggaccttggtacac |
4498106 |
T |
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| Q |
144 |
tatctgaccctctgatattaagataatatcatcaaagagatcaaatgtctcaggagcaggttgaag |
209 |
Q |
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| T |
4498105 |
aacttgaccctcagatataagaataatgtcatcaaaaagatcgaatgtctcaggagctggttgaag |
4498040 |
T |
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