View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_6 (Length: 530)
Name: NF11252_low_6
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 12 - 511
Target Start/End: Complemental strand, 28085927 - 28085428
Alignment:
| Q |
12 |
atgaaaagtagcattgcgtaataatggagttttggagaacattatctggtgacaagaattttagacaatttagactgtagcaaaaggaggaatgagacaa |
111 |
Q |
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| T |
28085927 |
atgaaaagtagcattgcgtaataatggagttttggagaacattatctggtgacaagaattttagacaatttagactgtagcaaaaggaggaatgagacaa |
28085828 |
T |
|
| Q |
112 |
atcaatacccacgatcgcaagaaactttacgtgttgtagttgggcagtatgatccaggagaacagaaaatatcactattgttcagcacaccagtccaaat |
211 |
Q |
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| T |
28085827 |
atcaatacccacgatcgcaagaaactttacgtgttgtagttgggcagtatgatccaggagaacagaaaatatcactattgttcagcacaccagtccaaat |
28085728 |
T |
|
| Q |
212 |
atcagcactaccacaatcgtgatctgtttctcccgaaggtatctggtaactatatctgcaatttcatttttacgttttagggatgaaacttggacaacaa |
311 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28085727 |
atcagcactaccacaatcatgatctgtttctcccgaaggtatctggtaactatatctgcaatttcatttttacgttttagggatgaaacttggacaacaa |
28085628 |
T |
|
| Q |
312 |
tggatataaattaacatgaagatggagcttacggttcacatagtccagtctgtttgttcagttttgcaagtggacaataagaacctagggggcaagcttc |
411 |
Q |
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| T |
28085627 |
tggatataaattaacatgaagatggagcttacggttcacatagtccagtctgtttgttcagttttgcaagtggacaataagaacctagggggcaagcttc |
28085528 |
T |
|
| Q |
412 |
attcagaggaaaatgagaaaggttaaaaatgtaatgcttgagcagcgaattctcatccacaatagatgatttagatattaaatgaaataaaagttacttt |
511 |
Q |
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| T |
28085527 |
attcagaggaaaatgagaaaggttaaaaatgtaatgcttgagcagcgaattctcatccacaaaagataatttagatattaaatgaaataaaagttacttt |
28085428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 125 - 277
Target Start/End: Original strand, 41044378 - 41044530
Alignment:
| Q |
125 |
atcgcaagaaactttacgtgttgtagttgggcagtatgatccaggagaacagaaaatatcactattgttcagcacaccagtccaaatatcagcactacca |
224 |
Q |
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||||||||||||||| | |||| || || || |||||||| ||||||||||| |||| ||||||||| | ||||||| ||||||||||||||||||| |
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| T |
41044378 |
atcgcaagaaactttgctcgttggagaaggacaatatgatcctggagaacagaagatattactattgttgacaacaccagaccaaatatcagcactacca |
41044477 |
T |
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| Q |
225 |
caatcgtgatctgtttctcccgaaggtatctggtaactatatctgcaatttca |
277 |
Q |
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||| |||| ||||||||| | ||| || ||||||||||| |||||| |||| |
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| T |
41044478 |
caagtatgatttgtttctcctgcaggaatttggtaactataactgcaaattca |
41044530 |
T |
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