View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11252_low_7 (Length: 527)

Name: NF11252_low_7
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11252_low_7
NF11252_low_7
[»] chr3 (6 HSPs)
chr3 (19-228)||(35189071-35189275)
chr3 (260-338)||(35188960-35189038)
chr3 (260-327)||(3861150-3861217)
chr3 (401-447)||(35188851-35188897)
chr3 (271-316)||(49019534-49019579)
chr3 (476-512)||(35188787-35188823)
[»] chr7 (2 HSPs)
chr7 (260-336)||(46135143-46135219)
chr7 (260-336)||(37587446-37587522)
[»] chr5 (2 HSPs)
chr5 (260-336)||(1554767-1554843)
chr5 (260-316)||(9102340-9102396)
[»] chr6 (2 HSPs)
chr6 (260-335)||(8001329-8001404)
chr6 (269-327)||(20473497-20473555)
[»] chr1 (2 HSPs)
chr1 (260-335)||(5242587-5242662)
chr1 (269-336)||(37306356-37306423)
[»] chr2 (5 HSPs)
chr2 (261-335)||(13467436-13467510)
chr2 (260-336)||(4639993-4640069)
chr2 (260-336)||(34099066-34099142)
chr2 (260-327)||(9483989-9484056)
chr2 (261-338)||(13464697-13464774)
[»] chr4 (4 HSPs)
chr4 (260-334)||(50091284-50091358)
chr4 (260-338)||(36280260-36280338)
chr4 (262-324)||(11942579-11942641)
chr4 (285-333)||(10065288-10065336)
[»] chr8 (4 HSPs)
chr8 (269-334)||(15282133-15282198)
chr8 (269-334)||(15462502-15462567)
chr8 (261-323)||(15311441-15311503)
chr8 (261-323)||(15491810-15491872)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 35189275 - 35189071
Alignment:
Q  19 gattgattattggtgcagcataaatagaatagaatagaatagaggggacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagt 118  Q
    ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35189275 gattgattattggtgcagcataaatagaatagaataga-----ggggacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagt 35189181  T
Q  119 tgtcgtttgatgatgttaagttaatgttcatgtttccctccctccgcaaaatcatcgttggggtctccccaataatccaagtgagcacgtggaattgtct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35189180 tgtcgtttgatgatgttaagttaatgttcatgtttccctccctccgcaaaatcatcgttggggtctccccaataatccaagtgagcacgtggaattgtct 35189081  T
Q  219 gtgcaaaaca 228  Q
    ||||||||||    
T  35189080 gtgcaaaaca 35189071  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 35189038 - 35188960
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttct 338  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35189038 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagcttct 35188960  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 3861150 - 3861217
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 327  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3861150 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 3861217  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 35188897 - 35188851
Alignment:
Q  401 gctctcattgaccattcgcagttattaacattcaacattttcccctc 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35188897 gctctcattgaccattcgcagttattaacattcaacattttcccctc 35188851  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 49019534 - 49019579
Alignment:
Q  271 gagagttgaactcaagacctcccacttactaaacgggtgctctaac 316  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  49019534 gagagttgaactcaagacctcccgcttactaaacaggtgctctaac 49019579  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 512
Target Start/End: Complemental strand, 35188823 - 35188787
Alignment:
Q  476 gtcaaagatattcaacatttttcttttagtttgtgct 512  Q
    |||||||||||||||||||||||||||||||||||||    
T  35188823 gtcaaagatattcaacatttttcttttagtttgtgct 35188787  T

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Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 46135219 - 46135143
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 336  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46135219 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctt 46135143  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 37587446 - 37587522
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 336  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  37587446 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 37587522  T

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Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 1554843 - 1554767
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 336  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1554843 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctt 1554767  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 9102396 - 9102340
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaac 316  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9102396 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaac 9102340  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 8001404 - 8001329
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 335  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8001404 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 8001329  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 20473497 - 20473555
Alignment:
Q  269 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 327  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20473497 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 20473555  T

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Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 5242662 - 5242587
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 335  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5242662 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 5242587  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 37306423 - 37306356
Alignment:
Q  269 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 336  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  37306423 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 37306356  T

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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 13467436 - 13467510
Alignment:
Q  261 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 335  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13467436 tgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 13467510  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 4639993 - 4640069
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 336  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  4639993 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 4640069  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 34099142 - 34099066
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 336  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  34099142 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 34099066  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 9483989 - 9484056
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 327  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9483989 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 9484056  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 13464697 - 13464774
Alignment:
Q  261 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttct 338  Q
    |||||||||| | ||||||| |||||||||||| ||||||||||  |||||||||||||||||||||| |||||||||    
T  13464697 tgctctcgttaaaagttgaattcaagacctcccgcttactaaacaagtgctctaaccaactgagctacaagagcttct 13464774  T

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Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 50091358 - 50091284
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 334  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  50091358 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacaggtgctctaaccaactgagctacgagagc 50091284  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 36280338 - 36280260
Alignment:
Q  260 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttct 338  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||    
T  36280338 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttct 36280260  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 11942579 - 11942641
Alignment:
Q  262 gctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgag 324  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  11942579 gctctcgttgagagtcgaactcaagacgtcccgcttactaaacgggtgatctaaccaactgag 11942641  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 10065336 - 10065288
Alignment:
Q  285 agacctcccacttactaaacgggtgctctaaccaactgagctacgagag 333  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  10065336 agacctcccgcttactaaacgggtgctctaaccaaatgagctacgagag 10065288  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 15282133 - 15282198
Alignment:
Q  269 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 334  Q
    |||||||||||| |||| |||||||| ||| |||||  ||||||||||||||||| |||| |||||    
T  15282133 ttgagagttgaattcaaaacctcccatttattaaacaagtgctctaaccaactgaactaccagagc 15282198  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 15462502 - 15462567
Alignment:
Q  269 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 334  Q
    |||||||||||| |||| |||||||| ||| |||||  ||||||||||||||||| |||| |||||    
T  15462502 ttgagagttgaattcaaaacctcccatttattaaacaagtgctctaaccaactgaactaccagagc 15462567  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 15311441 - 15311503
Alignment:
Q  261 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactga 323  Q
    |||||||||||||||||||| |||| ||||| | || | ||||||| | ||||||||||||||    
T  15311441 tgctctcgttgagagttgaattcaaaacctctcgctcattaaacggattctctaaccaactga 15311503  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 15491810 - 15491872
Alignment:
Q  261 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactga 323  Q
    |||||||||||||||||||| |||| ||||| | || | ||||||| | ||||||||||||||    
T  15491810 tgctctcgttgagagttgaattcaaaacctctcgctcattaaacggattctctaaccaactga 15491872  T

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