View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_8 (Length: 522)
Name: NF11252_low_8
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 42093401 - 42093808
Alignment:
| Q |
1 |
acataaggcaactaataaaaggacatctcacaatttgttgattacttaatcatcaaatcacttaagtgcttaaaagtacaactaaccaaaagagtacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42093401 |
acataaggcaactaataaaaggacatctcacaatttgttgattacttaatcatcaaatcacttaagtgcttaaaagtacaactaaccaaaacagtacatt |
42093500 |
T |
|
| Q |
101 |
tctcaactcaaaaccgtgtttaacaaatagaagaaccnnnnnnnnnnntt-gaaacggctaaactttattaaggaaaaaaggcagcctgcgcgagacgca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42093501 |
tctcaactcaaaaccgtgtttaacaaatagaagaaccaaacttttttttttgaaacggctaaactttattaaggaaaaaaggcagcctgcgcgagacgca |
42093600 |
T |
|
| Q |
200 |
caatgcaagcgaaaacaacatacaaaaggcaccggatatgagcggctaacctcaagacaatcaccaaaaaagtataagccccctgtcaatacacacacac |
299 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
42093601 |
caatgcaagcgaaaacaacatacaaaaggcaccggatatgagcggctaacctcaagacaatcacc--aaaagtataagccccctgtcaat--acacacac |
42093696 |
T |
|
| Q |
300 |
cctactaatcccagctgcctgcccgaaagaccagcagcacagctgagggaaaaacggaaaaacagcaacgnnnnnnnncacaggaaaacaccaacagaga |
399 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
42093697 |
cctaccaatcccagctgcatacccgaaagaccagcagcacagctgagggaaaaacggaaaaacagcagcg-aaaaaaacacaggaaaacaccaacagaga |
42093795 |
T |
|
| Q |
400 |
ggttcctgaaaaa |
412 |
Q |
| |
|
||||||||||||| |
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|
| T |
42093796 |
ggttcctgaaaaa |
42093808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 406 - 504
Target Start/End: Original strand, 42094744 - 42094842
Alignment:
| Q |
406 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaataattaagaggtaattacatgttgtcaagcaagataagatact |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
42094744 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaataattaagaggtaattacatgttatcaagcaagataagatact |
42094842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29707309 - 29707418
Alignment:
| Q |
1 |
acataaggcaactaataaaaggacatctcacaatttgttgattacttaatcatcaaatcacttaagtgcttaaaagtacaactaaccaaaagagtacatt |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||||||| |
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|
| T |
29707309 |
acataaggcaactaataagagtacatctcacaatttgttgattacttaatcatcaaatcactaaagtgctaaaaagtacacacaaccaatagagtacatt |
29707408 |
T |
|
| Q |
101 |
tctcaactca |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
29707409 |
tctcaactca |
29707418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 193 - 342
Target Start/End: Original strand, 6774368 - 6774515
Alignment:
| Q |
193 |
agacgcacaatgcaagcgaaaacaacatacaaaaggcaccggatatgagcggctaacctcaagacaatcaccaaaaaagtataagccccctgtcaataca |
292 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| | |||||| || ||||||||||||||||||||| ||| | ||||| |||||||||||||| |
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|
| T |
6774368 |
agacgcacaatgcaagggaaaaacacatacaaaaggccctggatatatgcagctaacctcaagacaatcacc--aaatgaataag-cccctgtcaataca |
6774464 |
T |
|
| Q |
293 |
cacacac-cctactaatcccagctgcctgcccgaaagaccagcagcacagc |
342 |
Q |
| |
|
|| || | || |||||||| |||||||| ||| ||| |||||||||||||| |
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|
| T |
6774465 |
cagacccaccaactaatccaagctgcctacccaaaaaaccagcagcacagc |
6774515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27271547 - 27271438
Alignment:
| Q |
1 |
acataaggcaactaataaaaggacatctcacaatttgttgattacttaatcatcaaatcacttaagtgcttaaaagtacaactaaccaaaagagtacatt |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||||||| |
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|
| T |
27271547 |
acataaggcaactaataagagtacatctcacaatttgttgattacttaatcatcaaatcactaaagtgctaaaaagtacacacaaccaatagagtacatt |
27271448 |
T |
|
| Q |
101 |
tctcaactca |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
27271447 |
tctcaactca |
27271438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 27509861 - 27509966
Alignment:
| Q |
5 |
aaggcaactaataaaaggacatctcacaatttgttgattacttaatcatcaaatcacttaagtgcttaaaagtacaactaaccaaaagagtacatttctc |
104 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||| ||||||||||||||||||||| |
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|
| T |
27509861 |
aaggcaaataataagagtacatctcacaatttgttgattactttatcatcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctc |
27509960 |
T |
|
| Q |
105 |
aactca |
110 |
Q |
| |
|
|||||| |
|
|
| T |
27509961 |
aactca |
27509966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 461
Target Start/End: Original strand, 1660907 - 1660962
Alignment:
| Q |
406 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaa |
461 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||||||| ||||| | ||||||||||| |
|
|
| T |
1660907 |
tgaaaaattataacagattcatatgttcctttcaaacaccaaaaccatatgttaaa |
1660962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 39211075 - 39210970
Alignment:
| Q |
5 |
aaggcaactaataaaaggacatctcacaatttgttgattacttaatcatcaaatcacttaagtgcttaaaagtacaactaaccaaaagagtacatttctc |
104 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||| ||||||| |||||||||||||| ||||| | ||||||||| ||||||||||||||||||||| |
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|
| T |
39211075 |
aaggcaaataataagagtacatctcacaatttgttaattactttatcatcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctc |
39210976 |
T |
|
| Q |
105 |
aactca |
110 |
Q |
| |
|
|||||| |
|
|
| T |
39210975 |
aactca |
39210970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 35164154 - 35164099
Alignment:
| Q |
406 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaa |
461 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||||||| ||||| | ||||||||||| |
|
|
| T |
35164154 |
tgaaaaattataacagattcatatgttcctttcaaacaccaaaaccatatgttaaa |
35164099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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