View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11252_low_9 (Length: 522)
Name: NF11252_low_9
Description: NF11252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11252_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 42912934 - 42913225
Alignment:
| Q |
12 |
ttggactatgtgtacttgcagtttggtttggatcgattttaaggaagggaaatcatttaattaaattgttccgattcagtccaattgtatttgatttgat |
111 |
Q |
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| T |
42912934 |
ttggactatgtatacttgcagtttggtttggaccaattttaaggaagggaaatcatttaattaaattgttccgattcagtccaattgtatttgatttgat |
42913033 |
T |
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| Q |
112 |
tctactcggacatttgcattccaacgccaatacatcattgcaaggatggtcttatatttaatcgcaagtgtacatctacctatatatcaaaaggagatta |
211 |
Q |
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| T |
42913034 |
tctactcggacatttgcattccaacgccaagacatcattgcaaggatggtcttatatttaatcgcaactgtacatctacctatatatcaaaaggagatta |
42913133 |
T |
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| Q |
212 |
gacttgacttttatcgcttgtttttagatctcttatattctgaaatcgatctaacctatttttacaaaagagatctaaaaacaagcaataca |
303 |
Q |
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| T |
42913134 |
gacttgacttttatcgcttgtttttagatctcttatattctaaaatcgatctgacctatttttacaaaagagatctaaaaacaagcaataca |
42913225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 365 - 505
Target Start/End: Original strand, 42913287 - 42913427
Alignment:
| Q |
365 |
taaacaacctgatttaggtcaacaatccagaagttgaaaacaaaaattaacaaacatttataaaggaaacatcaacgatattgtgttattatgaaatgaa |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42913287 |
taaacaacctgatttaggtcaacaatccagaagttgaaaataaaaattaacaaacatttataaaggaaacatcaacgatattgtgttattatgaaatgaa |
42913386 |
T |
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| Q |
465 |
aacattaccttgttcaagggccagacaacaatggctcctcc |
505 |
Q |
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| T |
42913387 |
aacattaccttgttcaagggccagacaacaatggctcctcc |
42913427 |
T |
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