View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11253_high_12 (Length: 309)
Name: NF11253_high_12
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11253_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 51846536 - 51846812
Alignment:
| Q |
10 |
atgaaggaagcaattaggaggatagaggaattacaagtttaaagatgaatatgatcaatttttatgtcaatgtcaatgtcaatgtcaatatgctagctta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51846536 |
atgaaggaagcaattaggaggatagaggaattacaagtttaaagatgaatatgatcaatttttatgt------caatgtcaatgtcaatatgctagctta |
51846629 |
T |
|
| Q |
110 |
gtatgtaacagttgcttttgtaggtgagagttgcagtcctaggaaagattaattaattcaattgattcagcatcttgaaccaacaatgaagtattcatga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51846630 |
gtatgtaacagttgcttttgtaggtgagagttgcagtcctaggaaagattaattaattcaattgattcagcatcttgaaccaacaatgaagtattcatga |
51846729 |
T |
|
| Q |
210 |
atgatcctctcaaagcttagcggtgaacaatgagttttgcacaacactacatatattaaagggcatctatagaggaagaaaaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51846730 |
atgatcctctcaaagcttagcggtgaacaatgagttttgcacaacactacatatattaaagggcatctatagaggaagaaaaa |
51846812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University